K16028

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16028

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16028

Determination of introduced cDNA(s)

  • J033005D09 - Rice Full-length cDNAs - Original: J033005D09

    full reading [+] show sequence

    Nucleotide sequence: J033005D09 - full reading 
    GGATTTTAGT CTCACGAACT GCTGGGAGGC TAGGGTTCCC GGCGGCTCCC 
    CTTGCGCCAC CGCGCCGCGG CCGTCTTCTC GCCGCCGACG CTGAGACAGG 
    CCGCGCCGCC GCTCCTCTCC ACGCGCCGGT CCGGTCCGGT CCGTCGCCGT 
    TCGGTGCTCC GAGCTCGCTC AACCAGCGGC GATGGCGGGC GGCGACAGGG 
    AGAGGGATGT CGAGGAGGAG ACGAGGAACC AGATGATGCA GAATCTCTTC 
    GGCGACCAGT CGGAGGAGGA GGAGGAGGAC GACGACGAGG CCGTCGATTT 
    CGTCGACGAG GACGACCACC CGCATCCGCA TCAGCAGCAG CAGCAGCTTC 
    GCCACCAGGT GGTGGATGAC GACGACGACA ACGACGCCCA CGCCCGCTCC 
    GGCTACCACT CGGAAGAAGT GGAAGGTGAG GCTGATAATG GAGGGGAAGG 
    TGAAGCGGAA GGAGAAGGTG AAAGTGAGGG GCAAGTTGGG ATGGAAGAAG 
    AAAGTGAAGC TGAAGCTCAT CGTGCTGATC TTGATCAAGG AGAAAGTGAT 
    GGGGAAAAGG TCCAGAGCTC CCCAGGAGAA CTTAGTGACC GGGTGATGCA 
    AAATGATGCA GCAGGCATGG ATAGTGAAGA TGAAGCCTAT CAACAGCGGC 
    CAGTAGCTAG CAGAAGAAGA GGAGTTGTTG CCTCTGAATC TGAGGGGTCT 
    GAAGATGACT ATTATGCTGG TCGAGCTCAT GAAGATGAGG AACCTCGTCA 
    AACAAGGAAA GCATCAAGCT CGCCAGTTGA GGAGGAGAGA GATCAGGAAG 
    TTGTCCGTGA TGTATTTGGT GAAAGCGATG AAGATGAACC TGCTCCATAT 
    CGTGATCAAC AAGAAATTGA TGAAGATTCC CATAGATCAC CCATGGAAGA 
    TGAAGGTCAC TATGAGAAGG ATTTGCAGCC CGACGATGTA GTGGCTGATG 
    AAGATATGAG ATATGAATCA GATGAAAATC GTGAACTGAA ACCAAAAGAG 
    AAACCAGTTG GTCCACCGCT GAACCTGGTG GTTCCACTTA AGCAGCCACC 
    AGCTCAACCC GAGAGAATGA ATGTGATCAA GGTATCAAAT ATTATGGGGA 
    TTGACCCAAA GCCTTTTGAT CCTAAAACAT ATGTGGAGGA GGATGTATTT 
    GTTACAGATG AATCTGGGAC CAAAAAAAGG ATACGACTGG AGGACAATAT 
    TGTGCGGTGG AGAACCGTTA AGAATGCTAA TGGCACTACA TCTTGTGAAA 
    GTAATGCGCG CATTGTAAAA TGGAAAGATG GGACCATGCA GCTGCTGATT 
    GGCAATGAAG TTCTTGATAT ATCTGTTCAT GAAGCACATC ATGATCAGTC 
    CCATCTGTTT CTGAGGAATG GGAAGGGAGT CCTTCAATCA CAAGGAAGGC 
    TCTTACGGAA AATGAGATTC ATGCCATCTT CCTTGTCTTC GAAATCACAT 
    CGTTTATTAA CTGCTCTTGT TGATTCTCAG AATAAGAAAA CGGTTAAGAT 
    GCAAAAATGG ATCGAATCTA AGGATCCAGA GAGAGTGAAG CAGGAAAAAG 
    AAAGGGCCTT GGGCCAAAAT ATTCGAGCCC ATTCAATTCT TCAACGCAAA 
    AGAGAAAAGG TTAGCCGCAA GTACACACAG CCCGCCAGGC AAAGAAGGCA 
    GCTTTCTCCC GGATTTTTGG AAGATGCATT AGATGAGGAT GAGGAACCTG 
    ACCATCAATA TGGTTCTCGC CGAATGCCAG CACGTAGTCG TTTTGGGGAT 
    GAACTGGAGG CTGAAGCACT AGCTGAGAGG CGCATAGTTA GTGCAAAGAA 
    GTCAAGTATG GGCAGAAACA TTCCTCGCAA ACCATCCTTT CCTGCTCGTC 
    CGCCTAGACG ACAGGAAAAT GAATATTCTG AGAGTGAAAG GGAGGAGTCA 
    GAGTATGAAA CTGAAGGAGA GGATATTGAG CACTCACCAA CCCAGGGGAG 
    GGAAGATGAG CTTGATGAAG AGGATGAATA TGAGGAAGAT GTGGAAGAAG 
    AAGCAGCTAT GTCAGATGAA GAAATCGAGG AACCAAAACG GAGGAGAGAA 
    TCTGGGGGTG CCAGTGCCAG CCAAAGGCGC AAGGAGATCG ACTCGGATGA 
    TGATTCTCCT CCAAGAAAAC AACAGGCAGT TCATCGTCGG AAGGCAGTCG 
    TTTTTGACAG TGATGACGAA TGATGAGAAG AAAAAGGTTG CAAACACCAA 
    TATTTGCTTG AGGATTGTTG TTTAGAAATA ACAAAAAAAA ATGTTGTCAA 
    TTGTTAATGT ATTCGGGATG CTGTCTTGAA ATCAAATGTT AGCTGTGCTA 
    CCAGTTTTCC TACACTAATA TAGATGTTAT AGTAGTATTA TTTTCT

    Gene models with high sequence identity

    1. AT5G61150.2 [+] show detail - leo1-like family protein
      E-value: 5e-97; Score: 352.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Leo1-like protein 1e-71
    HMMPanther LEO1 PROTEIN 3.3e-61

    See the detailed result >

    AT5G61150.2

    Model type
    Protein coding
    Short Description
    leo1-like family protein
    Curator Summary
    Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold.
    Computational Description
    VERNALIZATION INDEPENDENCE 4 (VIP4); INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leo1-like protein (InterPro:IPR007149); Has 69096 Blast hits to 31991 proteins in 1682 species: Archae - 184; Bacteria - 8816; Metazoa - 27909; Fungi - 8257; Plants - 3470; Viruses - 882; Other Eukaryotes - 19578 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR