K16028

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16028

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16028

Determination of introduced cDNA(s)

  • J033005D09 - Rice Full-length cDNAs - Original: J033005D09

    full reading [+] show sequence

    Nucleotide sequence: J033005D09 - full reading
    GGATTTTAGT CTCACGAACT GCTGGGAGGC TAGGGTTCCC GGCGGCTCCC 
    CTTGCGCCAC CGCGCCGCGG CCGTCTTCTC GCCGCCGACG CTGAGACAGG
    CCGCGCCGCC GCTCCTCTCC ACGCGCCGGT CCGGTCCGGT CCGTCGCCGT
    TCGGTGCTCC GAGCTCGCTC AACCAGCGGC GATGGCGGGC GGCGACAGGG
    AGAGGGATGT CGAGGAGGAG ACGAGGAACC AGATGATGCA GAATCTCTTC
    GGCGACCAGT CGGAGGAGGA GGAGGAGGAC GACGACGAGG CCGTCGATTT
    CGTCGACGAG GACGACCACC CGCATCCGCA TCAGCAGCAG CAGCAGCTTC
    GCCACCAGGT GGTGGATGAC GACGACGACA ACGACGCCCA CGCCCGCTCC
    GGCTACCACT CGGAAGAAGT GGAAGGTGAG GCTGATAATG GAGGGGAAGG
    TGAAGCGGAA GGAGAAGGTG AAAGTGAGGG GCAAGTTGGG ATGGAAGAAG
    AAAGTGAAGC TGAAGCTCAT CGTGCTGATC TTGATCAAGG AGAAAGTGAT
    GGGGAAAAGG TCCAGAGCTC CCCAGGAGAA CTTAGTGACC GGGTGATGCA
    AAATGATGCA GCAGGCATGG ATAGTGAAGA TGAAGCCTAT CAACAGCGGC
    CAGTAGCTAG CAGAAGAAGA GGAGTTGTTG CCTCTGAATC TGAGGGGTCT
    GAAGATGACT ATTATGCTGG TCGAGCTCAT GAAGATGAGG AACCTCGTCA
    AACAAGGAAA GCATCAAGCT CGCCAGTTGA GGAGGAGAGA GATCAGGAAG
    TTGTCCGTGA TGTATTTGGT GAAAGCGATG AAGATGAACC TGCTCCATAT
    CGTGATCAAC AAGAAATTGA TGAAGATTCC CATAGATCAC CCATGGAAGA
    TGAAGGTCAC TATGAGAAGG ATTTGCAGCC CGACGATGTA GTGGCTGATG
    AAGATATGAG ATATGAATCA GATGAAAATC GTGAACTGAA ACCAAAAGAG
    AAACCAGTTG GTCCACCGCT GAACCTGGTG GTTCCACTTA AGCAGCCACC
    AGCTCAACCC GAGAGAATGA ATGTGATCAA GGTATCAAAT ATTATGGGGA
    TTGACCCAAA GCCTTTTGAT CCTAAAACAT ATGTGGAGGA GGATGTATTT
    GTTACAGATG AATCTGGGAC CAAAAAAAGG ATACGACTGG AGGACAATAT
    TGTGCGGTGG AGAACCGTTA AGAATGCTAA TGGCACTACA TCTTGTGAAA
    GTAATGCGCG CATTGTAAAA TGGAAAGATG GGACCATGCA GCTGCTGATT
    GGCAATGAAG TTCTTGATAT ATCTGTTCAT GAAGCACATC ATGATCAGTC
    CCATCTGTTT CTGAGGAATG GGAAGGGAGT CCTTCAATCA CAAGGAAGGC
    TCTTACGGAA AATGAGATTC ATGCCATCTT CCTTGTCTTC GAAATCACAT
    CGTTTATTAA CTGCTCTTGT TGATTCTCAG AATAAGAAAA CGGTTAAGAT
    GCAAAAATGG ATCGAATCTA AGGATCCAGA GAGAGTGAAG CAGGAAAAAG
    AAAGGGCCTT GGGCCAAAAT ATTCGAGCCC ATTCAATTCT TCAACGCAAA
    AGAGAAAAGG TTAGCCGCAA GTACACACAG CCCGCCAGGC AAAGAAGGCA
    GCTTTCTCCC GGATTTTTGG AAGATGCATT AGATGAGGAT GAGGAACCTG
    ACCATCAATA TGGTTCTCGC CGAATGCCAG CACGTAGTCG TTTTGGGGAT
    GAACTGGAGG CTGAAGCACT AGCTGAGAGG CGCATAGTTA GTGCAAAGAA
    GTCAAGTATG GGCAGAAACA TTCCTCGCAA ACCATCCTTT CCTGCTCGTC
    CGCCTAGACG ACAGGAAAAT GAATATTCTG AGAGTGAAAG GGAGGAGTCA
    GAGTATGAAA CTGAAGGAGA GGATATTGAG CACTCACCAA CCCAGGGGAG
    GGAAGATGAG CTTGATGAAG AGGATGAATA TGAGGAAGAT GTGGAAGAAG
    AAGCAGCTAT GTCAGATGAA GAAATCGAGG AACCAAAACG GAGGAGAGAA
    TCTGGGGGTG CCAGTGCCAG CCAAAGGCGC AAGGAGATCG ACTCGGATGA
    TGATTCTCCT CCAAGAAAAC AACAGGCAGT TCATCGTCGG AAGGCAGTCG
    TTTTTGACAG TGATGACGAA TGATGAGAAG AAAAAGGTTG CAAACACCAA
    TATTTGCTTG AGGATTGTTG TTTAGAAATA ACAAAAAAAA ATGTTGTCAA
    TTGTTAATGT ATTCGGGATG CTGTCTTGAA ATCAAATGTT AGCTGTGCTA
    CCAGTTTTCC TACACTAATA TAGATGTTAT AGTAGTATTA TTTTCT

    Gene models with high sequence identity

    1. AT5G61150.2 [+] show detail - leo1-like family protein
      E-value: 5e-97; Score: 352.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Leo1-like protein 1e-71
    HMMPanther LEO1 PROTEIN 3.3e-61

    See the detailed result >

    AT5G61150.2

    Model type
    Protein coding
    Short Description
    leo1-like family protein
    Curator Summary
    Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold.
    Computational Description
    VERNALIZATION INDEPENDENCE 4 (VIP4); INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leo1-like protein (InterPro:IPR007149); Has 69096 Blast hits to 31991 proteins in 1682 species: Archae - 184; Bacteria - 8816; Metazoa - 27909; Fungi - 8257; Plants - 3470; Viruses - 882; Other Eukaryotes - 19578 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR