K16031

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16031

Determination of introduced cDNA(s)

J013001H19 - Rice Full-length cDNAs - Original: J013001H19

full reading [+] show sequence

GGGGGCCGAT CTGCCATCGC CGCCCATCGA TCTGCAGCTT CGCCCGCGCC 
GCCGGCGAGA GGGCGCCCCG AGGGCACGGT GGTGGGCGGC CTCCTCCTCC 
CCTTCCCCTC GCCTCCGCTC GAGCCTCCTC CCCCCTGTGA GGCGTCGTCG 
GCGTAGTCGC GCGCGCGGCC GGGCGAGAGG GGCGAGGCGG GCCGGCCTCC 
TTACACCCCG AATCCGTCGC CGTGCGGATC GAATTGAAGG CGGGGGACGT 
TTATCTTCAC GTGAGGATCA ATGTCCAATT ATCACGAAGA CCACATTGAA 
GAGATGGAGG ATGATTATGA CATGGACGAC ACTGCTGATG ACATGGGCGA 
AGAGAACTAT GAGCGAGGGA TGAGGGATTC GGATTCAGAG GATGAAGAGC 
ATGGCCAGTC GAATGATAAG ATCCCAGATA CCTCATCAGT TGATGCAAGA 
AAAGGAAAGG ATATTCAAGG AATACCATGG GAGAAGCTAG CGATCACACG 
TGATAAATAC AGACAGACCA GATTAGATCA GTACAAGAAT TATGAGAACA 
TGCCTAATTC TGGAGAAGCA GCCGCAAAGG AATGCAAACC GACTGAAAAA 
GGCGGGATGT ATTATGAATT TAGGCGAAAT ACTAGATCAG TAAAATCAAC 
TATACTACAT TTTCAGCTGA GAAATTTAGT ATGGGCGACA TCCAAGCACG 
ATGTCTATTT AATGTCACAT TTCTCTGTTC TTCATTGGTC GGCACTGAGT 
GGTCTTGATA CCGAGCTTAT GAATGTCCAA GGACATGTGG CACCCAGGGA 
GAAGCACCCT GGAAGTTTAC TTGAGGGTTT TTCTGGGACC CAAGTTAGTA 
CCTTGTCAGT CAAGGACAAT TTGCTGGTAG CTGGTGGGTT TCAAGGAGAG 
CTAATCTGCA AGCACCTTGA TCGAGAAGGA ATTAGCTTTT GCTGTCGAAC 
TACATATGAT GAAAACGCTA TTACTAATGC TGTTGAGATA TTCAATACTA 
CCAGTGGTGC TGTTCACTTC ATGGCATCGA ATAATGACTC TGGTGTAAGA 
GACTATGATA TGGAGAGGTT TCAGCTCTAC AAGCATTTTC AGTTTGAATG 
GCCAGTGAAT CATACAGCAT TGAGTCCTGA CAGAAAGCTT GCTGTTATTG 
TGGGGGATGA TCCTAATGGT TTACTAATTG ACGCCAATTC AGGAAAGACT 
CTTCATTCCT TGAAAGGTCA CTTTGATTAC TCGTTTGCAT CAGCTTGGAG 
CCCAGATGGC AGAACATTTG CTACTGGCAA CCAAGATAAG ACATGCCGGA 
TTTGGGATGC GCGGAATCTC TCTAAATCCC TCCATGTTTT GAGGGGTAAC 
CTTGGAGCCA TAAGATCAAT CCGCTTCACG TCAGATGGGC AGTTCATGTC 
GATGGCAGAA CCAGCGGACT TTGTCCACGT CTTCGATGTC GGGAGTGATT 
ACACCAGAAG GCAAGAGCTG GACTTCTTTG GTGAGATATC TGGCATGTCT 
TTCAGCCCGG ACACCGACAT GCTTTTTGTC GGTGTGTGGG ATAGAACATA 
CGGCAGCCTC CTCCAGTTTG GCCGTCTGTA TAATCACTCG TATCTTGACT 
CGCTGTGTTG AGGTGAGGAA CACAAAGCAG ACGTTGGGCG CGCTGTGCCT 
CAGCTGTGCA CCCTGTGCTG AATCTTGTCA TCATACATTA GGTATCCCAA 
ATCAGAATTT GAAGTCGTTT ACCCGATAAT TCAATTAATA AAACTTGTAC 
CCTTCTGTAT GTGG

Gene models with high sequence identity

AT3G13340.2 [+] show detail - Transducin/WD40 repeat-like superfamily protein
E-value: 0; Score: 638.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	WD40 REPEAT PROTEIN	0.0000000000000016
superfamily	WD40 repeat-like-containing domain	8.1e-39
Gene3D	WD40/YVTN repeat-like-containing domain	2e-29
ProfileScan	WD40 repeat 2	13.148
ProfileScan	WD40-repeat-containing domain	14.846
HMMSmart	WD40 repeat	0.000000037
HMMSmart	WD40 repeat	6.6
HMMSmart	WD40 repeat	170
HMMPfam	WD40 repeat, subgroup	0.00000022
HMMPfam	WD40 repeat, subgroup	1.2

See the detailed result >

AT3G13340.2

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Computational Description: Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G55680.1).
Link: InterPro Scan - TAIR