K16033

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16033

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16033

Determination of introduced cDNA(s)

  • J023041B21 - Rice Full-length cDNAs - Original: J023041B21

    full reading [+] show sequence

    Nucleotide sequence: J023041B21 - full reading 
    GACCGCCATG GCTGCCACAC TCTCCTCTGC TCCTGCCCCC TCCAAGCACT 
    GCTCCATTGT CAGAGCCCAG CACTCCCCTC CCCCTTCCAT CCTCTCATCA 
    TCAACTAAGA CGGCCTTCCA TGGGCTGTCA CTGGTGGACA GGCGGTGGGC 
    GGCCTCTGTC GGCGGCGGCA GCGGGCGGCG GCGGAGGGTG CTTCAGGTGA 
    ACGCGAGGAC GGCCGGCGCG GCGAAGAACA TCGAGGTGGA GGTCGACAAG 
    CCGCTCGGCC TCACCCTCGG CCAGAAGACC GGCGGCGGCG TCGTCATCAC 
    CGCTGTGGAT TCTGGAGGGA ACGCGGCAAG AGCAGGCCTG AAATCAGGTG 
    ACCAGGTGCT CTACACAAGT AGCTTCTTTG GAGATGAACT ATGGCCTGCA 
    GATAAGCTGG GGTTCACCAA GACAGCCATC CAGGCAAAGC CAGACTCTGT 
    CTACTTTGTG GTTAGCAGGG GTGCACAAGT TGATGTGAAG CGACTTCCGA 
    AAAGGCCGGC GCCTCCGAGA TTTGGCCGGA AATTGACGGA ATCACAAAAG 
    GCTAGAGCAA CACACATTTG CCTTGATTGT GGATACATAT ACTTCCTTCC 
    CAAGCCTTTC GAAGAACAGC CTGATGAATA TGGCTGCCCA CAATGCAACG 
    CACCAAAGAA GCGGTTCGCG AAATATGATG CAGAAACCGG GAGGGCGATT 
    GGTGGTGCGC TACCACCTAT TACAGTGATC GTCAGTTTGA TAATCGGCAT 
    TGCCGGAGTA GGGGCTTTGC TTGTATATGG CCTTCAATAG GCTGCCAATA 
    TCTTCACAGG TTTTTGACTG TGTAACAAGA AGCTCAGCAG ATTGCTGGTG 
    CACTCTCTTA TCTAGCAAGA AATTCTGAGT GATATATATC AAGGGGGAAA 
    GGAAAAACAT GAGTTGGAGG CTAATGGCTA AATG

    Gene models with high sequence identity

    1. AT5G17170.1 [+] show detail - rubredoxin family protein
      E-value: 2e-85; Score: 312.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan PDZ/DHR/GLGF 9.652
    ProfileScan Rubredoxin-type Fe(Cys)4 protein 10.024
    superfamily Rubredoxin-like 2.8e-08
    superfamily PDZ/DHR/GLGF 4.6e-07
    Gene3D Rubredoxin-type Fe(Cys)4 protein 0.00078

    See the detailed result >

    AT5G17170.1

    Model type
    Protein coding
    Short Description
    rubredoxin family protein
    Computational Description
    enhancer of sos3-1 (ENH1); FUNCTIONS IN: electron carrier activity, metal ion binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rubredoxin-type Fe(Cys)4 protein (InterPro:IPR004039), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: Rubredoxin-like superfamily protein (TAIR:AT5G51010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR