K16044

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16044

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16044

Determination of introduced cDNA(s)

  • J023023M22 - Rice Full-length cDNAs - Original: J023023M22

    full reading [+] show sequence

    Nucleotide sequence: J023023M22 - full reading 
    GTCCCATCCT CCCCACCCCC CAAGCGGCGG CGAGACCAAA TCCCCCACTT 
    CTCTCTCAAT CTCTCTCTCT GCTAGGGTTT ATCCCTCCGC GCCGCCGCCC 
    CCGGAAGACG AGAGAGCGCC ATGGCCGGCG GTCCCGCGGC GGTGTCGTTC 
    CTGACCAGCA TCGCCAAGGC GGCGGCGGGG CTCGGCGCCG CGGCCTCCCT 
    CCTGTCGGCG TCGCTCTACA CCGTCGACGG CGGCGAGCGC GCCGTCATCT 
    TCGACCGGTT CCGCGGGGTG CTCCCGGAGA CCGTCGGCGA GGGGACCCAC 
    TTCCTCGTGC CGTGGCTCCA GAAGCCCTTC GTCTTCGACA TCCGCACGCG 
    CCCCCACAAC TTCTCCTCCA ACTCCGGCAC CAAGGACCTG CAGATGGTCA 
    ACCTCACCCT CCGCCTCCTC TCCCGCCCCG ACGTCGTGCA CCTCCCCACC 
    ATCTTCACCT CCCTCGGCCT CGAGTACGAC GACAAGGTGC TCCCCTCCAT 
    CGGCAACGAG GTGCTCAAGG CCGTCGTCGC GCAGTTCAAC GCCGACCAGC 
    TCCTCACCGA GCGGCCCCAC GTCTCAGCCC TCGTCCGCGA CGCCCTCATC 
    CGCCGCGCCC GCGAGTTCAA CATCATCCTC GACGACGTCG CCATCACCCA 
    CCTCTCCTAC GGCATCGAGT TCTCGCAGGC CGTCGAGAAG AAGCAGGTGG 
    CGCAGCAGGA GGCCGAGCGC TCCAAGTTCC TCGTGGCCAA GGCTGAGCAG 
    GAGAGGCGCG CGGCCATCGT GCGCGCGGAG GGAGAGAGTG AGTCCGCGCG 
    GCTCATTTCT GAGGCCACCG CCGCCGCTGG GACAGGGCTG ATTGAGCTGA 
    GGAGGATCGA GGCGGCCAGG GAGATTGCTG CCGAGCTGGC CCGTTCTCCT 
    AATGTTGCAT ACGTTCCTGC TGGGGACAAT GGCCGGATGC TGCTCGGCCT 
    CAACGCTGCC GGGTTCGGCC GGTGATCCGT CACTCCAATT TTACCCCTTT 
    AGTTGCCCAG GCAACCGCTC TGTGTTACAT TAAACTGGAA TGATGGTATG 
    GGGAATTATG TTATCTGCTA CTTTTGGTAA TATTTAGTCT GGATGTCTTT 
    GAACGGAATG TGCTAATCTT TGTGATCCAA ATAAGTTCTG GGTCTAAGAC 
    TCATTTATGT TTTACG

    Gene models with high sequence identity

    1. AT5G40770.1 [+] show detail - prohibitin 3
      E-value: 6e-100; Score: 361.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    FPrintScan Prohibitin 7.5e-68
    HMMPanther Prohibitin 3.7e-169
    Coil coiled-coil 0
    HMMPfam Band 7 protein 7.1e-23
    HMMSmart Band 7 protein 3.8e-41

    See the detailed result >

    AT5G40770.1

    Model type
    Protein coding
    Short Description
    prohibitin 3
    Curator Summary
    prohibitin 3
    Computational Description
    prohibitin 3 (PHB3); INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: prohibitin 4 (TAIR:AT3G27280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR