K16047

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16047

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16047

Determination of introduced cDNA(s)

  • J013070N02 - Rice Full-length cDNAs - Original: J013070N02

    full reading [+] show sequence

    Nucleotide sequence: J013070N02 - full reading 
    GACGCCCACC CATCCACTCG CACCCCGCGC CGCACCAACA CACGCAGAGG 
    TGGTGAACTG GTTGATCGAT GCTTGCTGCT GCTGCGCGTC GAGGCGGCTC 
    CATCGGCGGC AACCGCTGAT CGATCGATCG ATCCCGCGGG TTTCGTAGCA 
    CCCGAGCAGA ATGGGTGCTG GAAAGAAGAC TCAGACCGAG AACGAGTTCC 
    GTGAGCTCCC GGAAAAGGAG CTAGGAGGGG TGGTCTTTTG TTGCAATAAC 
    AACACATTCG ATGAATGCTT CACTAAACAG TTATTTGGTT TGCCTCAACG 
    CAATATCTTG TATGTGAAGA ATGTTAAACC TGGCTTGCCT CTCTTTCTGT 
    TCAATTATAG TAACAGACAA TTGCATGGCA TTTTCAAGGC TACAAGCACT 
    GGCCAGCTTA ATATCGACCG ATTTGCTTGG ATGTCTGAAC AGTCTAATGA 
    TGCAAAGACA AATGCAAAGA CAACACCATT TCCTGCACAG GTCCGCTTCT 
    CTACCAGGAC AGAGTGCCCT CCACTTCCAG AAAGCAAATA CAAAAGTGTA 
    ATCATAAACA ATTATCGCAA GGATAAACCT AGCCACTTCC GTTTTGAGCT 
    AGACCATCGA CAAACAAGAG ATTTGATTTC TTTGTTTCTA CCTGCTCCTG 
    TTCGCGCTAA TCAAAACAAA CTTAGTATTC CAAAACCTCC TGCTACCGCT 
    CATACTGTTC CAAATCCATG GAATCGACCT CTGCCATTTC TTACAGCAAA 
    AGCACCTGTT GTTTCTGATA AAGTGAAGAG TGAATCCAAT GTGAAGGATG 
    TGGATCAGTT CAATGTTTCA TCACACTCAC ATGATATTGT TCCTCATACC 
    TTGCCTGATG TAGAAGTCGA CCTTGCTAGC ACAAGTACAA CATCAAGGAG 
    CAACCTTAAC AAAGATGCTT CTGGCTGTGA TGACCTGGTT GCTGGTTTGA 
    TCAAGGAAGA TAAAGAATCT GTGGATGATG ACCAGCATGC TAAAATGGAT 
    TTACCAGTAA AGCTGCAAGA GCTGTCTTCT TTACAACAGA AGGAAGCCAA 
    TTTCTTGGAG GATGCTCCTG TTTCTACTTC AGCTCAAAGC ATACGTCAAG 
    ATACACGGTT TGCTGCTACT CTCCCCAAAG ATTCATTTAA TGCCACATCT 
    CAATGTGACA CATCATTGAA AGATACATCC TTTGTGCAAT GCCATGAATA 
    TGCTGAGCTG TATCAAATTA TCAATGATTT ATCCAAGAAG ACCGAAGAAA 
    TGGAAAAGAT GAAGGTTGAT TCAGATCAAG AAATTTTGTT GTTGAAGAAA 
    TTGGTAAAGG TTATGGAAAG AAAAGTTGAA CATCTGGAAC AGCAGCTTGA 
    GAAATCGCAT AGCTCTTCAG CACCACTCTT CGGTGTAACA AATGATGATG 
    TAGAAGGGCC ATCAATACTC CTAACAGGTG GCCATAATGG CATTAACTGG 
    CTGTCATCCC TTGATTCATA TTGCCCTGCA ACGGACATAC TAGAAACTCT 
    AATGCCAATG AGCTCAGCCC GTGCATATGC GGCTGTTGCC ACATTAAAGG 
    ACCATGTCTT CATTTTTGGT GGTTGGAATG GCATTCGCAG TTTGTGGTAC 
    AACACAGTGG AGTGCTACAA CAGGGGAGCC AATAAGTGGA TAGGATTGCC 
    CTGCTTGAAT CATGAGAAAG GGCATCTTGC TGGAGCTACC TTGAATGGTA 
    AAATATTTGC TATTGGTGGG GGTGATGGGT CTCAGTCTTT TTCAGAAGTA 
    GAGATGTTTG ATCCAGCAGT GGGGAAATGG ATATACAGTT TGTCCATGCA 
    GCAACCTCGA TGTGCTCCTG CTGCGGCTGA ATTAAATGGC GTTCTCTATG 
    TAATTGGTGG TTATGATGGC AACATGTACT TACAGTCAGC AGAAAGGTAT 
    GATCCAAGGG AAGGCTTCTG GACCCAACTT CCACGTATGC GGACAAGAAG 
    AGGATCCCAT TCAGTAGTTG TCTTGGGGGA TTCACTACAT GCTCTGGGTG 
    GCCTGAATAG AAATACCACG TTTTCCAGCG TAGAGATTTT TGACACCCGT 
    GCCAACTCAT GGAGAAGGGG GAGCCCACTC AGCGTCCCAA GAGCACACGG 
    ATGTGCGGTT ACATTGGACG GCAACGCATA CCTCATTGGT GGTATCCAAA 
    GCAGTGAAGA ATACGTTGAA ACTGTTGAGG TTTACAAGGA GGGCCAAGGC 
    TGGTCCATCT CTGGTTCCAA GGCATTCGGG AAGAGAGCTT TCGCATGCGC 
    CGTTGCCATT TGACAGGATT GCAGAAGTGC AGATGAACCC CCGGGCCGGT 
    TTTGTACAGC ACCAGTCCCC AACCCCGCCT CACAGTATTA CCTTCTCTCA 
    AGCGAAATAT TGCCGCTCAT TGCTGAGCAC TGACGCCTGA CGGCCCATCC 
    ATTCTGTGCA TCCCAGTCAT ACGGTTTTTA CATTTTAGAA ACAACACCGT 
    AGCGAGTTCT GGTATGCGTT AACTCTGCCC GTTGTTGTTT CTCACTGAAG 
    ATAGGTGTTG TTGGTTGTCA CCTGATTGTA GCGGAGCAAA CTGAACTGTC 
    TACAGGACAC TAGTTACTTA GAGAAGTTCG AATGAACAAA CTTTAGCTGG 
    TGATAGCAGT ACATATGGGA GGCTTGGAAG CTGGTATAAT TTTTGATTTT 
    TTTTTTGAAG C

    Gene models with high sequence identity

    1. AT5G01660.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch r...
      E-value: 2e-101; Score: 367.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Development/cell death domain 55.467
    Gene3D Kelch-type beta propeller 3.7e-66
    superfamily Galactose oxidase/kelch, beta-propeller 1.6e-56
    Coil coiled-coil 0
    HMMSmart Development/cell death domain 2.5e-88
    HMMSmart Kelch repeat type 1 0.000014
    HMMSmart Kelch repeat type 1 0.000026
    HMMSmart Kelch repeat type 1 0.0000000017
    HMMSmart Kelch repeat type 1 0.0000000000000036
    HMMSmart Kelch repeat type 1 0.0000000012
    HMMPfam Development/cell death domain 1e-56
    HMMPfam Kelch repeat type 1 0.00000014
    HMMPfam Kelch repeat type 1 0.00000017
    HMMPfam Kelch repeat type 1 0.0000000000064
    HMMPfam Kelch repeat type 1 0.000000073
    HMMPanther KELCH-RELATED 1.3e-59
    HMMPanther Kelch related 1.3e-59

    See the detailed result >

    AT5G01660.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR