K16105

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16105

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16105

Determination of introduced cDNA(s)

  • J013116G03 - Rice Full-length cDNAs - Original: J013116G03

    full reading [+] show sequence

    Nucleotide sequence: J013116G03 - full reading 
    GGCCTCACCT CACGAAACCG GCAATGGCGG CCGCCGGAGC ATCGGCTCTC 
    CGGCCACACC TCGCCCTTCT CCCCGCCGGC GGCGGTGGAG GCGGAGGCGG 
    CGGAACCCGT AGCTATGCCC TCCAAGCGCT ATCCTTCGTC TCGCCCCTCC 
    TCACTCATTG CGGCCGACGA CGCCGCTGCG TGCTCCGCTC CAAGGCCTCT 
    TCGTCTCCGT CTCCCCCGCC ATCGCCGGGG AAGGAGGCGG TGGCTGTCCC 
    GACGGCGGAG TCGTGCGTCA ACCTGGGACT CGAGCTCTTC TCCAAGGGCA 
    GGGTGAAGGA TGCTCTTGAA CAATTTGAGA ATGCCCTAGA GCTGAATCCA 
    AATCCTGTTG AAGCCCAAGC AGCACTATAC AATAAAGCAT GCTGCCATGC 
    ATTTAGGGAA GAAAGCAACA AAGCTGCAGA TTGCTTAAGG ACAGCTCTGC 
    GAGATTATAA TCTCAAGTTT GGTACTATAC TTAATGATCC TGACTTGGCA 
    CCGTTCAGGG CATCACCGGA ATTCAAGGAA CTTCAAGAAG AGGCATTGCG 
    TGGTGGAGAA GATATTGGTT CTGGGTTCCG AAGAGACCTG AAACTCATTA 
    GTGAAGTACA AGCACCATTT CGTGGTGTCC GAAGGTTCTT TTATGTGGCG 
    TTAACTGCAG CAGCTGGAAT TTCAACATTC TTTACCATTC CTAGACTTAT 
    ACTTGCAGTT CAAGGTGGCG ATGGTGCCCC TGATCTGCTG GAAACTGTTG 
    GGAATGCTGC CATCAATATT GGAGGTATTG TTGTGCTCGT GGCTTTGTAT 
    TTCTGGGAAA ACAAGAAAGA AGAGCAGCAG ATCACACAAA TTTCTCGCAA 
    TGAAACCCTT TCAAGGTTAC CTGTCCGCCT GTCAACCAAT CGCATTATTG 
    AGCTTGTGCA ACTCCGGGAC ATTACTAGGC CAGTTATACT GGCAGGTTCA 
    AAAGCATCCA TTACTCGAGC AATGCAAAGA GCTGAGAGAT ATCGGACTGA 
    ACTGCTGAAA CGAGGTGTTC TTCTAATTCC TGTGATCTTT GGTGCTTCTC 
    AGAAAGCCCA AAGTAAGCCA AGAGGCTTTG GAAGTTCAAG ATCTGCTGCA 
    TCAGCTCCTT CAGTTGGGGA TGACTTTGAG AAGCGTACTG AATCTATTGC 
    AGCGAAATCA CGGTTAAAAG CTGAAGAGCG ATTTAAGGCT GATATTGTCT 
    CTCCTGAACA ATGGGAAAGT TGGATACGTG ACCAGCAAGA GTCTGAAGGT 
    GTCACTCCCG GTGAAGATGT CTATATAATC CTCCGATTGG ATGGTCGTGT 
    CAGAAGATCT GGAAGAGGCA TGCCAAATTG GAACGACATA TTGCAGGAAC 
    TTCCACGACT TGAAGAACTG CTGAGCAAAC TTGAACGTTG ATGAAGGTGT 
    GTATACAACT GCAGTTTGAT CATCCATATG TTTCTCCATT GTATTATTAA 
    TTCCCTAATC TATGTATAGA CCATACCAAT GTAATTTTGA GGGAAAATTT 
    TGTTTATGCC ACTAATATAT GAATTCCCAA CTTCTGACGT ACTCCACTAG 
    TTACTGTGTG ACTTCTCGTT TATGTCACTA CTATCAAGCC ACATACCATT 
    TTTTTTCCTG TTTTGCTCCC ATTCTGTCAA TTTGGACTGT AAGAGAAAAC 
    ATTGCAAAAT GACAGATATA TCTTCCCTGT GTC

    Gene models with high sequence identity

    1. AT1G02910.1 [+] show detail - tetratricopeptide repeat (TPR)-containing protein
      E-value: 8e-149; Score: 524.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF3493 3.3e-25
    HMMPfam Tetratricopeptide TPR-1 0.0000004
    ProfileScan Tetratricopeptide repeat 11.476
    ProfileScan Tetratricopeptide repeat-containing 12.191
    HMMSmart Tetratricopeptide repeat 0.000012
    superfamily TPR-like 0.000000000061
    Gene3D Tetratricopeptide-like helical 0.00000014

    See the detailed result >

    AT1G02910.1

    Model type
    Protein coding
    Short Description
    tetratricopeptide repeat (TPR)-containing protein
    Curator Summary
    Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues.
    Computational Description
    LOW PSII ACCUMULATION1 (LPA1); FUNCTIONS IN: binding; INVOLVED IN: photosystem II oxygen evolving complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28740.1); Has 201 Blast hits to 200 proteins in 49 species: Archae - 3; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR