K16111

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16111

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16111

Determination of introduced cDNA(s)

  • J033117B12 - Rice Full-length cDNAs - Original: J033117B12

    full reading [+] show sequence

    Nucleotide sequence: J033117B12 - full reading
    GACTTCCCCA TCTACTACTA CTACTACTCC TACTTTGAAT ACCTGCTCTT 
    GCTCTTCGCC TCGTTCGTCT CCAAGAAGCT CGAGAGCCGA GGGCTTCTCC
    GTCTCTTCGT TCATCTGCTG CTGTGTCTCC CCTGGTGAGG TACGACAAGA
    TGTTGGAACA TTCGGAGAGT GCAACAGAAA AAATTATGAG CAGCATCATG
    GATACCATTG CTGAGAACCT TCCTAAGCAG AAATCTGGGA AATTTGACGT
    AGGCGCTGCC TCTGACAAAA TGAAGGAGAA GCTGTTTGGT CGTCAGAAGA
    CCATTCATCG AGTTCTGGGT GGTGGAAAGC CTGCTGATGT GTTGCTATGG
    AGGAACAAGA AGATATCCTC CAGTGTCCTG GCTCTTGCAA CAGCAATTTG
    GGTATTCTTT GAGTGGCTCG ACTACCACTT CCTAACAATT GTTTCATTTG
    CCCTTGTCCT TGGAATGGTT GTCCAGTTCG TGTGGTCCAA TTTCTCAAGT
    GCTCTAAGCG GATCTCCTTC TAAAGTACCC CGTGTTGAGC TGCCAGAAGA
    GCTGTTTGTG AACATTGCAG TTGCAGTTGG TACCCAAGTA AATAAGTTCT
    TGAGTTTTCT TCAGGATGTG TCTTGTGAAA GAAACCTGAA GCACTTTGTA
    CTGGCAATCG TTGGACTGTG GGCTGCGGCT GTTATTGGGG GCTGGTGCAA
    TTTCTTAACT GTCATTTACA TTGGATTTGT TAGCGCTCAC ACGCTGCCCG
    TGCTCTACGA GAAGTATGAA GATCAAGTTG ATGATTTCCT ATACAATATT
    CTTGGCCTCC TGCGTGACCA GTATCAGAAA CTTGATCAAG GTGTCTTGAG
    CAAGATACCG AAGGGGAACA TGAAGTTCAA GAAGAGCGAG TAGATTGTCT
    GGGTTTTAAG AACTGAAATC ATAGATTAGC TGGGTTTTCA TCAGTGGAAT
    GAATCAAGAA TTTGTACCAT GCTCAGTTGC GTATTGCAGA CATTGGTTGT
    CAGTTGTCAT CTGAGAGCTG TGTGCTTTCC TGAATGGGGC GCTCATTTGC
    TGCAATCTGA ATTAATATTT CAACTGCTCT GCCCTGCC

    Gene models with high sequence identity

    1. AT3G10260.3 [+] show detail - Reticulon family protein
      E-value: 7e-74; Score: 274.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Reticulon 3e-49
    ProfileScan Reticulon 53.201
    HMMPanther RETICULON-RELATED (PLANT) 2.3e-82
    HMMPanther Reticulon 2.3e-82

    See the detailed result >

    AT3G10260.3

    Model type
    Protein coding
    Short Description
    Reticulon family protein
    Computational Description
    Reticulon family protein; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G61560.1); Has 1060 Blast hits to 1060 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 591; Fungi - 0; Plants - 458; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR