K16111

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16111

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16111

Determination of introduced cDNA(s)

  • J033117B12 - Rice Full-length cDNAs - Original: J033117B12

    full reading [+] show sequence

    Nucleotide sequence: J033117B12 - full reading 
    GACTTCCCCA TCTACTACTA CTACTACTCC TACTTTGAAT ACCTGCTCTT 
    GCTCTTCGCC TCGTTCGTCT CCAAGAAGCT CGAGAGCCGA GGGCTTCTCC 
    GTCTCTTCGT TCATCTGCTG CTGTGTCTCC CCTGGTGAGG TACGACAAGA 
    TGTTGGAACA TTCGGAGAGT GCAACAGAAA AAATTATGAG CAGCATCATG 
    GATACCATTG CTGAGAACCT TCCTAAGCAG AAATCTGGGA AATTTGACGT 
    AGGCGCTGCC TCTGACAAAA TGAAGGAGAA GCTGTTTGGT CGTCAGAAGA 
    CCATTCATCG AGTTCTGGGT GGTGGAAAGC CTGCTGATGT GTTGCTATGG 
    AGGAACAAGA AGATATCCTC CAGTGTCCTG GCTCTTGCAA CAGCAATTTG 
    GGTATTCTTT GAGTGGCTCG ACTACCACTT CCTAACAATT GTTTCATTTG 
    CCCTTGTCCT TGGAATGGTT GTCCAGTTCG TGTGGTCCAA TTTCTCAAGT 
    GCTCTAAGCG GATCTCCTTC TAAAGTACCC CGTGTTGAGC TGCCAGAAGA 
    GCTGTTTGTG AACATTGCAG TTGCAGTTGG TACCCAAGTA AATAAGTTCT 
    TGAGTTTTCT TCAGGATGTG TCTTGTGAAA GAAACCTGAA GCACTTTGTA 
    CTGGCAATCG TTGGACTGTG GGCTGCGGCT GTTATTGGGG GCTGGTGCAA 
    TTTCTTAACT GTCATTTACA TTGGATTTGT TAGCGCTCAC ACGCTGCCCG 
    TGCTCTACGA GAAGTATGAA GATCAAGTTG ATGATTTCCT ATACAATATT 
    CTTGGCCTCC TGCGTGACCA GTATCAGAAA CTTGATCAAG GTGTCTTGAG 
    CAAGATACCG AAGGGGAACA TGAAGTTCAA GAAGAGCGAG TAGATTGTCT 
    GGGTTTTAAG AACTGAAATC ATAGATTAGC TGGGTTTTCA TCAGTGGAAT 
    GAATCAAGAA TTTGTACCAT GCTCAGTTGC GTATTGCAGA CATTGGTTGT 
    CAGTTGTCAT CTGAGAGCTG TGTGCTTTCC TGAATGGGGC GCTCATTTGC 
    TGCAATCTGA ATTAATATTT CAACTGCTCT GCCCTGCC

    Gene models with high sequence identity

    1. AT3G10260.3 [+] show detail - Reticulon family protein
      E-value: 7e-74; Score: 274.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Reticulon 3e-49
    ProfileScan Reticulon 53.201
    HMMPanther RETICULON-RELATED (PLANT) 2.3e-82
    HMMPanther Reticulon 2.3e-82

    See the detailed result >

    AT3G10260.3

    Model type
    Protein coding
    Short Description
    Reticulon family protein
    Computational Description
    Reticulon family protein; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G61560.1); Has 1060 Blast hits to 1060 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 591; Fungi - 0; Plants - 458; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR