K16124

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16124

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16124

Determination of introduced cDNA(s)

  • J013123P20 - Rice Full-length cDNAs - Original: J013123P20

    full reading [+] show sequence

    Nucleotide sequence: J013123P20 - full reading 
    GACACGTGTA CACGACGCGA CGCCGGCGAC GGCGGCAGCC ATGGAGCCCG 
    CGGCGATGGA CCGCATCGCC GGCCGCCTCG CCGCCGTAGA CGGCCTCTAC 
    TACCCGACCA CCTTCCTCCT CGCCAACCCG CCGCCGTCCG CCCCGGACCG 
    CAAGGCCGCC CTCCTCGCGC TCCTCTCCCG CGACGCCCCG CTCTTCCTCG 
    AGCGCTACGG CGGGTCGCTG TCCCGCGACG AGCTCGCCGC CTTCGACGCG 
    CTCGCCGGCG ACTACGAGGT CGGCTGGCAC CTCCGCCGCC TCCGCGCGGC 
    CTCCGAGGGG GGCCCCTCCG CGTCCCGCGT CCGCAACCGC CGCCGCGCCT 
    ACGACCGCCT GGTGCGCGAG GGGGAGTACT TCTCCGAGGA GGCTATGCGG 
    GAGCGGGAGC CATACCTGCA CCACGAGTAC CTTGGCAGGT TCCAGGATCC 
    CACGGGACGG GCCATGGCGA GGCCGGGGGA GCGGTGGTCC GAGACGCTGA 
    TGCGGCGGGC TGCGAGGCCG TGATCGTTGA GAAGATTCGA GGGGAGCAGA 
    TTAGGAGAGG GGTTGATCCC AGCGAGTGGG TAGGTGGTGG CGCTGAGGAG 
    GCCATGGAGG AGCAGGAAGA GGAGGAAGAA GAAGAAGAGG AGGAGGAGGA 
    GGAGGAGGAA GAGAGCGAGG AGGAGCAAGG CATGGACATG GAGGAGAAAG 
    GAAGAGGTGC CGATAATTCT TCCGAGAATC CGAGTGTGAC TGAGGTGGTT 
    GACTCCAACA AAACTGCAGG GGCTTCCAAG CAAACATTAT CTGCTGAAGA 
    TATGGAGGAT CAACTTGAAC AGTTTACCAG CTTGATGCAA CAGAAGTTCC 
    TGTCCGGTGA AGACTCTGAG CATATGGACT ACTCTCGGAT CGATAACGAC 
    GAGATGCTGG ATGACCATTG GTCAAAAGAA GCCAACTATG ATGCGGAGGA 
    GAAGTATTTC GAAGAGGATT AGTTCAAAGT TCAAACTAGG CTGCTGTTAT 
    AGCATCAGTT ATGTAGTGCA TCATCGCATC TCGTTTTTTT TTTGTTCATG 
    TTCAGCACTT ACTTAGTCTA TCATGTACAT ATATCTATAT ATGCAGTTGT 
    TGCCCCTCTA ATCCGAATAA GTTGAGTAAC TTGCTTATGA AAACTACCGT 
    ATGTGTTGGA ACATCAATCA GAAAATAGGG TCCTGTCTTG TGGAGATGTT 
    TACAAATTGC

    Gene models with high sequence identity

    1. AT5G47090.1 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2052, coiled-coil (In...
      E-value: 5e-41; Score: 165.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF2052, coiled-coil 5.3e-27
    HMMPfam Protein of unknown function DUF2052, coiled-coil 3.9e-18
    Coil coiled-coil 0

    See the detailed result >

    AT5G47090.1

    Model type
    Protein coding
    Computational Description
    unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2052, coiled-coil (InterPro:IPR018613); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR