K16125

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16125

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16125

Determination of introduced cDNA(s)

  • J033045F21 - Rice Full-length cDNAs - Original: J033045F21

    full reading [+] show sequence

    Nucleotide sequence: J033045F21 - full reading 
    GTATAACTCA ACCTTTTGAT CTCGCTACGA AGCTCCTCCG CTCCACCCAG 
    GCACGAGCGC CGCCGCGGCC GACTCCACCG GACACCACCC AACGCCGCCA 
    GCCGCCTCCT CCCATCCTCC CTCGATCCGT ACGGATAGCC TCCCCGCTCG 
    CTCGGTCTGC GCCCGTCGTC GTCGTCCCGC CGTCTTATCC CTCCCGCGAC 
    TCGGCGACGC GCGAAGGCCT CCGGCGCGGG GCTGAAGATT TACCATGAAT 
    TCTCTCAGCA ATGGATTACT GAAGGGCTTG AGGAGGGTCT TAGAACAGCA 
    GAGAAAACCA ATTGATTTCT ACAGAAAATC TCAAGCTTGG AGTTCTACTG 
    TTTCCTTTTC TGATATTGAT GAGAAGAGTG AAATGGGAGG TGATGATGAT 
    TATACAGATT CAAGACGAGA GTTAGAACCC CAAAGCGTAG ACCCCAAGAA 
    GGGCTGGGGA TTCCGTGGTG TTCACAGGGC TATAATATGC GGAAAAGTCG 
    GACAGGTTCC TGTGCAGAAA ATTTTAAGGA ATGGTCGTAC AGTGACTGTT 
    TTTACAGTTG GAACTGGTGG CATGTTTGAC CAGAGGGTAG TAGGGGATGC 
    AGATCTGCCA AAGCCAGCTC AGTGGCATCG GATAGCCATT CATAATGACC 
    AGCTAGGTGC TTTTGCTGTC CAGAAGCTGG TGAAGAATTC TGCAGTTTAT 
    GTTGAGGGTG ATATTGAAAC CAGAGTATAC AATGACAGCA TTAATGATCA 
    AGTGAAAAAT ATACCAGAGA TTTGTCTTCG ACGCGATGGT AAGATTCGGC 
    TGATTAAATC TGGCGAGAGT GCTGCTAGCA TTTCATTAGA TGAGCTAAGA 
    GAAGGATTGT TCTAGTTTGA AAGATCTCAG CACAAGCAGG CCAGGAGTAC 
    AGGTTCAAAA GATAAAGTGG ATACGTGCAG GCTCAACGAT GATGCTGGCC 
    TCTCAAAGAA AAGAAAAACG ACGATGCTGC TTCACCGAAG CGAAATTTGT 
    TGTAGCAGGC ATGTGAACCT TGTCCTGGCC GCCCTTCCAG TCGTATTTTC 
    ATTATCAACA TCCTTTAATG TACTCTTGAT TAACATCTTA GCAGTCAAAT 
    TTACAGC

    Gene models with high sequence identity

    1. AT4G11060.1 [+] show detail - mitochondrially targeted single-stranded DNA binding protein
      E-value: 2e-60; Score: 229.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Primosome PriB/single-strand DNA-binding 11.663
    HMMPfam Primosome PriB/single-strand DNA-binding 1.8e-17
    superfamily Nucleic acid-binding, OB-fold-like 1.4e-16
    Gene3D Nucleic acid-binding, OB-fold 7e-16

    See the detailed result >

    AT4G11060.1

    Model type
    Protein coding
    Short Description
    mitochondrially targeted single-stranded DNA binding protein
    Computational Description
    mitochondrially targeted single-stranded DNA binding protein (MTSSB); FUNCTIONS IN: single-stranded DNA binding; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT3G18580.1); Has 3842 Blast hits to 3842 proteins in 1060 species: Archae - 0; Bacteria - 2446; Metazoa - 112; Fungi - 0; Plants - 68; Viruses - 25; Other Eukaryotes - 1191 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR