K16132

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16132

Determination of introduced cDNA(s)

J023025H03 - Rice Full-length cDNAs - Original: J023025H03

full reading [+] show sequence

GACAGATTTC GGTGCTCCTC CTCCTCCTCC CCCTCCTCGC CGCTGATCTC 
TCCCGTCCGT CCCCTCGCCT CCCTCACCAC CGCGGCGGCA TCAGGGCTCT 
CCCCCCCATG GCGGCCGCCA CTCCCAACGG CATCCCAGCT TCCAGACCTC 
TGGCTTCATC AGTTCCAATT GAGGCAGTTC TGTTCGACAT TGATGGGACC 
TTGTGCGACT CAGATCCTCT TCATCATGTG GCCTTCCAAG AAATGCTTCT 
TGAGATTGGG TATAACAACG GTGTGCCAAT AGACGAGGAG TTTTTCATAA 
ACAATATTGC TGGAAGGAGT GATGTTGAAG CTGCTCAGAA TTTGTTCCCT 
GATTGGCCCC TTGAGAAGGG GCTGAAATTC CTCGAGCAAC TTCTGATGCA 
AATATCGGAT GATCAACAGA CAGTTGAAAT GCTCTCTGGT TTCTCAGCAT 
CCGTTCCCCA ATCGCAGCTT CAACATGATT ATCATCAGGG TTGTCTTGGT 
GTTCATAGGG AGGAGGTTGG TGTTGCAGAT TCTACCACTG TTAGTAGTGC 
TGTGGTGACA GAAGAATGTA CTGTCCGTGA GCTTCAGGAT ATTGAAGGGC 
TTCTGATGCA AATAGAAAAT GACCAGGAAA ATGCCGAATC ACTGCCAGAT 
TTCTCCACAC CAGTTCATCT CCATGATTGT CATCAGGCCG CCTTCGGAGA 
TTTTCAAGGA AGCCAGAGGG CTACATTCAA CATTGCAAAT CTTTCTACTA 
TGGTGCAGGA AAGCCCAAAT TTTGATCTGC AAACTGGTCC AAGTAATCAA 
ATTACTGAGT CTATTCTCAC CACCGAGCCA ATGAATGGAG AAACAAATGC 
TGTGGAAGAA ACAAGTCCTC TGCGCTCTAT GTCAGTATTG GGTAGTTATG 
ATAGGCAGGA TGGTGATGAT GAATTCCTTG AAATCAATGA TTTCTTCGAC 
CCAGAAGATT TAGAACAGAT TTTGGGCAGT ACAAGAAGTC AGAACTTGAT 
TCCTGCTGAT GATGGAGTGT TTGATAGTTT GCAATACTCT GATGCTCCAA 
TGTTTCTGCC TGGTTCATTT GACAGAACTG GTGTGGTGGC TGAAAACCAT 
TATGTTGAAT TTGGTGCTAG TGGAATTCAG AACCAGGGAT TTCAGCATAC 
AACTGAATTA TTGGCACATA ATCAAGTCGC TCTAAATGTG CGGAACCATA 
TGAAGGACAA CCATGTTGTC TTCTCACATT CATCAGATGC TACCATTATT 
CATACAGTGA ATGAGCAACC GCCTAACCGG AGTTCAAATG CTTCACAATC 
ATGGTTCAAT GGGGCTCTAT CTGCCTTGCT CGATTCTGTT CCTAGCAGTC 
CAGCTATGGC TGCTGAAAAC ATAGGTCTTA ACAGAACACT GCAACGCATT 
TCGAGCTTTA GGTCACAACA ACCTGCAAGA GAAGAAGTTA GCAGTACTCT 
TATCAACACC AGAAGAAGAG GCGGTGGGCT AATTTTCATC TCGTTAATGG 
TTTTACTTGT TGCTATCATG TGGACCTTTA GCAATGGGTC TGCAGTCAAG 
CTTAGCAAGG GGTTATGGAA GTTTCCCTCT ACATAATAGG ATGCACCCGG 
TTATCCTGGT GGCCAGTGCT TCTTACTACT TCAAGTACTA ATTCTTGTTT 
TGCTATCCTT TCCTCTATTC CTTTACATTG AAAAAGGCAA CAATCTAGGA 
AAATATTAGA GGATTATGTG GTGTTAGCAC TTACTTTCAG AATATTATGC 
GAGAGATGTT AAAACAAAAC AAAATGAGAA AAAGAAACAT CTGAGGTGAA 
CTTCTGGATG TTTTTGTCCT CATCATTTTG ATGAAAGTAT ATATTGAATG 
TAATTAAACG ATGATGGATT GTTGAGAAGT GCAGTTGCTG TGCACGATAA 
ATGAAAAATC CATTTTTGTT GC

Gene models with high sequence identity

AT2G38740.1 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
E-value: 2e-23; Score: 108.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
HMMPanther	2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2	0.00000000021
superfamily	HAD-like	0.00000000001

See the detailed result >

AT2G38740.1

Model type: Protein coding
Short Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G56500.1); Has 17978 Blast hits to 17978 proteins in 2581 species: Archae - 265; Bacteria - 14433; Metazoa - 167; Fungi - 429; Plants - 387; Viruses - 3; Other Eukaryotes - 2294 (source: NCBI BLink).
Link: InterPro Scan - TAIR