K16133

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16133

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16133

Determination of introduced cDNA(s)

  • J033024K13 - Rice Full-length cDNAs - Original: J033024K13

    full reading [+] show sequence

    Nucleotide sequence: J033024K13 - full reading 
    GAAAGAGAGA GAGAGAGATG GCGCGCACCG AGAAGGTTGC CGGCGATGGC 
    TGCTCCGGTG GTGGTGGTGG TGGTGGAGAA GGTCAGGTGG AGGTGGAGGT 
    CGGGGTGGGG ATGGGGATGG ACGGGAAGGG AATGATAGAG TGCCGGATAT 
    GCCAGGAGGA AGGGGATGAG GGCGCCATGG ATTCCCCCTG CGCCTGCACT 
    GGCACGCTCA AGTTCGCCCA CAGGAAATGC ATACAAAGAT GGTGTGACAA 
    GAAGGGGAAC ATCACATGTG AAATCTGCAA CCAGGTTTAC TCTCCAAATT 
    ATGTCCTCCC TCCAACCAAG TGTTGTTCAG CTGAAATGGA CATGGATCTT 
    AGGCAAAGCT GGGTTGGACG AATTGATCCC CATGATTCGC ATTTTCTTGC 
    CATTGCCATT GCAGAGCAGC AGCTGCTGCA AGCTGAATTT GATGATTGTG 
    TGTCCTCAAA TTCAAGTGGT GCCACATGCT GCCGAACTGT TGTTTTAATT 
    TTGATGTTAC TTTTGCTTGT GCGCCATGTA GTTGTGTTTG TGAGAGATGT 
    TAGCATGCTG CAGGATGCAA CAGTGTTGTT TAGCGCAACT CTTCAGTTCG 
    CAGGATTCTT TCTTCCATGT TATGTTATAG CCCGTTCTTG TTATGCTTTT 
    CAACACCGGA GGCGAAGACA GGTTTAGGGG CCACCTGAAC CTGGCTGGAA 
    GCATTTACTC AAAACAACTC AACACCATCA CAGAGAGACG AGAGGAAAAG 
    CTTGTGAAGA AGTAACTCAA ACTCCCTTTG CTTGGAGCCT CTGCGAAAGA 
    TTTGGCTTAA TTTCTCCCCC AACAAGATGT AGTTGCCGAT TTAGACCATG 
    GGCCCTCGTG AAGCTCAACT GTACATAGGA GAGCGACCCA CCCCCTTCGG 
    CAAAACATTT ATGTTTTCGA AATTGAATTT TAGAGAAAAG AACAAGTGGA 
    TTTAAAAAAT TTCAGTGTCT TTCCAGCTGT TAATTCTTTC TGAAGAGAAG 
    TGGTCGATAT CGAAATATTG AGCATG

    Gene models with high sequence identity

    1. AT2G02960.4 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
      E-value: 2e-29; Score: 126.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-CH-type 23.047
    Gene3D no description 1.6e-13
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 1,8 2e-11
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 2e-11
    HMMPfam Protein of unknown function DUF3675 2.3e-34
    HMMPfam Zinc finger, C3HC4 RING-type 1.2e-07
    superfamily RING/U-box 3.9e-08
    HMMSmart Zinc finger, RING-CH-type 1.4e-20

    See the detailed result >

    AT2G02960.4

    Model type
    Protein coding
    Short Description
    RING/FYVE/PHD zinc finger superfamily protein
    Computational Description
    RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G14260.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR