K16135

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16135

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16135

Determination of introduced cDNA(s)

  • J023114B18 - Rice Full-length cDNAs - Original: J023114B18

    full reading [+] show sequence

    Nucleotide sequence: J023114B18 - full reading 
    GGGCATCTCT TCTTCTTCTT TTCTTCTCCA GATCGCGAGG CGGGCGGAAT 
    CGCGGAAGCA GGGGGATCCC GCAGCCGAAT CGGGCCGGAT CTCGCCGGCG 
    ATGATGCCGT CGGCGTCGGA CGCCGCGGCG GCGGCGGCGG CGCTGGAGCT 
    GCAGGAGTCC GGGTGGGAGG AGCTGCGGCG GGAGGCACGG AAGCTGGAGG 
    GTGACCTCGA CGTCAAGCTC TCCTCCTACG CGCGCCTCGC CGCGCGCTCC 
    TCCTCCGCCG CCGACGCCGC CTCCGCCTCC TCCCCGAGCG AGCGCTCCTC 
    CTGGAAGTCC ATGGAGTTCG AGATCCAGTC GCTGCTCGAC AAGCTGCAGG 
    ACGTCAACGA CGCCATGAGC CGCTGCGCCG CCTCCACCGC CCCCACCACC 
    TCCGTCTCGC AGAAGCTCGC CCGCCACCGC GACATCCTCC ACGAGTTCGC 
    GCAGGAGTTC AGGAGGACGA GGGGGAATCT GAGCTCCATC AGGGAGCACG 
    CCGATCTCCT CAGCTCTGTG CGGGACGACA TTACTGAGTC CAAGGCTACT 
    GGCGGCATGT CGCCGAGGGT GCATTTGCTC AGGGAGAGGG CCTCGATTCA 
    TGGCAGCATT AACCAGATTG ATGAGGTAAT TGGCCAAGCT CAGAGCACAA 
    GGGTAGCCCT TTCCAATCAG AGGGCATTGT TTGGGGATGT TCAAGGAAAA 
    GTCAAGCAGT TGGGTGAAAA GTTCCCTGTT ATTAGAGGAC TACTTGGTGC 
    CATCAAGAGG AAGAAATCAA AGGACACTAT CATCCTTTCA GCAGTGATCG 
    CGGCCTGCAC CATCTTTTTG ATTATTTACT GGCTTTCGAA ATGATGGTTG 
    TCTCCAGAAA ATCTCACCGT GAAGGCTTCC CCTCTGCGCA GAATCGCTGA 
    TACCAGATGA CGATAAGACT TGGTAGTATG TTTCATTTGT TAGGCTAAGA 
    GGAGGAATGA GAGATCGGAT TCTTCAGCTT TTATCAATTT GCCTTTGATA 
    TATACTCCTA CCTTGTATTT GGAGATTAAC CTGTCCTACA TGTACAGTAC 
    AGAGCAATTT TGCTTTCCAA AGTAACTTGT CTGGCTGGCT GAGC

    Gene models with high sequence identity

    1. AT2G45200.1 [+] show detail - golgi snare 12
      E-value: 2e-85; Score: 313.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam V-SNARE_C 1.8e-16
    HMMPanther GOS-28 SNARE- RELATED 2.7e-75

    See the detailed result >

    AT2G45200.1

    Model type
    Protein coding
    Short Description
    golgi snare 12
    Curator Summary
    Encodes a member of the GOS1 (Golgi SNARE) gene family.
    Computational Description
    golgi snare 12 (GOS12); FUNCTIONS IN: SNARE binding; INVOLVED IN: cellular membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: cytosol, integral to membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: golgi snare 11 (TAIR:AT1G15880.1); Has 416 Blast hits to 416 proteins in 175 species: Archae - 0; Bacteria - 4; Metazoa - 145; Fungi - 132; Plants - 101; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR