K16139

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16139

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16139

Determination of introduced cDNA(s)

  • J023041N10 - Rice Full-length cDNAs - Original: J023041N10

    full reading [+] show sequence

    Nucleotide sequence: J023041N10 - full reading 
    GGCGCCGCGC CTCGCCTCGC CTCGCCTCAC CTCACCTCAC CTCACCCTCC 
    GCCTCGTCTC CTTCCCCCCT TTCCTCTACC CACGCACGCC CTCTCTCCCA 
    TCCCAGCCGT AGCCGCGCCG TGACTTGTCT CGATCGGCGG CGAGGAGGAG 
    GGCTTCCGTT CCCTGGCCGG TGGGGGAGGA TCAGGCGGGG GGGCGGCGGG 
    GAGGGGGAGG AGATCGGTCT CGGTCGATCC GCGCGCGGCG GCGATGGCGC 
    GGGAGAGGCG GGAGATAAAG AGGATAGAGA GCGCGGCGGC GCGGCAGGTC 
    ACCTTCTCCA AGCGCCGGCG CGGCCTGTTC AAGAAGGCCG AGGAGCTCTC 
    CGTGCTCTGC GACGCCGACG TCGCGCTCAT CGTCTTCTCC TCCACGGGGA 
    AGCTATCCCA CTTCGCAAGC TCCAGTATGA ATGAAATCAT CGACAAGTAC 
    AACACACATT CTAATAATCT GGGGAAAGCA GAACAGCCTT CGCTCGACTT 
    GAATTTAGAA CATAGCGAGT ATGCACATTT GAATGAGCAA CTTGGGGAAG 
    CTAGTCTCCG GCTTAGACAA ATGAGAGGTG AGGAGCTTGA GGGATTGAGC 
    ATTGATGAAC TCCAGCAGCT AGAGAGGAAC CTGGAAGCTG GTCTGCACAG 
    GGTGATGCTG ACAAAGGATC AACAATTTAT GGAGCAGATC AGTGAACTCC 
    AGCGGAAGAG TTCACAGCTG GCAGAGGAGA ACATGCAACT CAGAAACCAG 
    GTATCCCAGA TATCACCAGC TGAGAAGCAA GTTGTTGATA CTGAAAATTT 
    TGTTACCGAA GGACAGTCCT CTGAATCTGT GATGACTGCA TTGCATTCTG 
    GAAGTTCACA GTCGCAGGAT AATGATGATG GCTCGGATGT ATCCCTGAAA 
    TTAGGGCTGC CTTGTGGTGC ATGGAAGTAA CTGAAAGGAA AAAAAAAGCA 
    TCCTTGCAGA TCTGGTTGGA GTCGTTGCGG CATCCAGGGG AGAAACGCTT 
    GTGTTATTCC CAAACCCAGA CTGCAATAAT ATAATCTTGC GTTGGAAGCG 
    AGATCAGTTA ACCTGATTTA TCATCCTTGT GGCTGCATGA TGCGATGTTC 
    CGCTTGTACT GTTCGCTAGG ATCTTGACTA AACTTTGAGA TCTATGTGCC 
    GTTTAATTAT CCCATCGCTA TTGGCACTCC TTATGCGATA CATCATATAT 
    GCACTTTGTT GCTATCTTAA TTATGATGCG TCTTTTGCAG CGTTC

    Gene models with high sequence identity

    1. AT2G22540.1 [+] show detail - K-box region and MADS-box transcription factor family protein
      E-value: 2e-51; Score: 199.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Transcription factor, MADS-box 0
    HMMSmart Transcription factor, MADS-box 2e-36
    FPrintScan Transcription factor, MADS-box 2.8e-24
    FPrintScan Transcription factor, MADS-box 2.8e-24
    FPrintScan Transcription factor, MADS-box 2.8e-24
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Transcription factor, MADS-box 7.1e-25
    HMMPfam Transcription factor, K-box 5.7e-16
    superfamily Transcription factor, MADS-box 1.6e-29
    HMMPanther MADS BOX PROTEIN 6.8e-57
    HMMPanther MADS BOX PROTEIN 6.8e-57
    ProfileScan Transcription factor, MADS-box 28.455
    ProfileScan Transcription factor, K-box 14.267

    See the detailed result >

    AT2G22540.1

    Model type
    Protein coding
    Short Description
    K-box region and MADS-box transcription factor family protein
    Curator Summary
    Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.
    Computational Description
    SHORT VEGETATIVE PHASE (SVP); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 24 (TAIR:AT4G24540.1); Has 7469 Blast hits to 7448 proteins in 905 species: Archae - 3; Bacteria - 14; Metazoa - 824; Fungi - 324; Plants - 6168; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR