K16144

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16144

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16144

Determination of introduced cDNA(s)

  • J023012N17 - Rice Full-length cDNAs - Original: J023012N17

    full reading [+] show sequence

    Nucleotide sequence: J023012N17 - full reading 
    GCAAATTAAA GAAAGCATAC TAAGCTTAGT GTGTGTTGAA TCGGCGACGA 
    AGATGTCGTC GTCGGCGACG GTCCACTACC GCGCCGACGG CAGCGTGGAG 
    ACGGCGGCGG TGGAGCCGCT GTACCCGATG GCGACGGTGG TGTACTTCCA 
    GTGCGTGTTC GCCGCCATCA CCCTCATCCT CGTCGCCGGC TCCCTCCTCG 
    GCCGCATGAG CTTCCTCGCC TGGATGATCT TCGTCCCGCT CTGGCTCACC 
    TTCTCCTACA CCGTCGGCGC CTTCTCCCTC TGGGGCGGCG GCTTCCTCTT 
    CCACTGGGGC GTCATCGACT ACTGCGGCGG CTACGTCATC CACGTCTCCG 
    CCGGCATCGC CGGCTTCACC GCCGCCTACT GGGTGGGGCC AAGGGCACAG 
    AAGGACAGGG AGAGGTTCCC GCCGAACAAC ATACTGTTCA CGCTGACGGG 
    GGCAGGGTTA CTATGGATGG GGTGGGCAGG GTTCAACGGC GGTGGTCCGT 
    ACGCCGCCAA CTCCGTCGCC TCCATGGCCG TCCTCAACAC CAACATCTGC 
    ACCGCCATGA GCCTCATCGT CTGGACATGC CTCGACGTCA TCTTCTTCAA 
    GAAGCCCTCC GTCGTCGGCG CCGTCCAGGG CATGATCACC GGCCTCGTCT 
    GCATCACCCC CGCTGCAGGG GTGGTGCAGG GGTGGGCGGC GCTGGTGATG 
    GGGGTGCTCG CCGGCAGCAT CCCGTGGTAC ACCATGATGA TCCTCCACAA 
    GCGCTCCAAG ATCCTGCAGC GCGTCGACGA CACCCTCGGC GTCTTCCACA 
    CCCACGGCGT CGCCGGCCTC CTCGGCGGCC TCCTCACCGG CCTCTTCGCC 
    GAGCCCACCC TCTGCAACCT CTTCCTCCCC GTCGCCGACT CCCGGGGCGC 
    CTTCTACGGC GGCGCCGGCG GCGCCCAGTT CGGCAAGCAG ATCGCCGGTG 
    GCCTCTTCGT CGTCGCCTGG AACGTCGCCG TCACCTCCCT CATCTGCCTC 
    GCCATCAACC TCCTCGTCCC GCTCCGCATG CCCGACGACA AGCTCGAGGT 
    CGGCGACGAC GCCGTCCACG GCGAGGAGGC CTACGCGCTC TGGGGCGACG 
    GCGAGATGTA CGACGTCACC AAGCACGGCT CCGACGCCGC CGTTGCGCCC 
    GTCGTCGTAT GATCGATGAC ATTGCATGTG CTGTCACCTG ATGAAAACCT 
    CAAGAAATTC ATACACACAG AAATTAATAC TACGTGTTTG CTTCTACTCG 
    TTAATTATGA AAATCTATGT TCAAGTTTTA CGTGTATTTA ACAGCGCGCG 
    TGTGGAGTTT TTAGGTATTG CACTTTGCAG ATTCAGGGGA GTCCGGTTCT 
    GTATTTTTGT TAGTTTGTAA AAATACATAC GTAGTTTTGT ATCCTTACTT 
    GATCTGAATG AACACAAGTG TAATATTGTA TTTTGTTAAT T

    Gene models with high sequence identity

    1. AT2G38290.1 [+] show detail - ammonium transporter 2
      E-value: 1e-126; Score: 450.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ammonium transporter 3.7e-73
    superfamily Ammonium transporter 1.2e-81
    FPrintScan Blood group Rhesus C/E/D polypeptide 0.0000000073
    FPrintScan Blood group Rhesus C/E/D polypeptide 0.0000000073
    FPrintScan Blood group Rhesus C/E/D polypeptide 0.0000000073
    FPrintScan Blood group Rhesus C/E/D polypeptide 0.0000000073
    FPrintScan Blood group Rhesus C/E/D polypeptide 0.0000000073
    HMMPanther AMMONIUM TRANSPORTER 2 5.9e-207
    HMMPanther Ammonium transporter 5.9e-207

    See the detailed result >

    AT2G38290.1

    Model type
    Protein coding
    Short Description
    ammonium transporter 2
    Curator Summary
    encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.
    Computational Description
    ammonium transporter 2 (AMT2); FUNCTIONS IN: ammonium transmembrane transporter activity, high affinity secondary active ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, response to nematode, cellular response to nitrogen starvation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Blood group Rhesus C/E/D polypeptide (InterPro:IPR002229), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;1 (TAIR:AT4G13510.1); Has 10296 Blast hits to 10279 proteins in 2052 species: Archae - 227; Bacteria - 4609; Metazoa - 555; Fungi - 427; Plants - 543; Viruses - 0; Other Eukaryotes - 3935 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR