K16148

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16148

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16148

Determination of introduced cDNA(s)

  • J023044A02 - Rice Full-length cDNAs - Original: J023044A02

    full reading [+] show sequence

    Nucleotide sequence: J023044A02 - full reading
    TCCCGTTTGC ACCACCACCA ATCTCTCTCT CTCTCTAAGA TCTCTATCTA 
    TCTAAAGATC TGAGCTACAA TTAATTAAAA CCTGATAAGA AGAAGACCCT
    GAGCTCAATC CCTTCTTATT ATACTATATA TATACTTCTG TATTTGTGCA
    CAGTGTTGGT ACAGGTATCT GCAGACAGCC ATATCTATCT TTCTAGCTAA
    TTGGCAATAT GCCTGAAGTC CACTGCTCGT CCTAAGATTT ACTTCTCCAC
    CCCCCCCCCT CTCCTTTGCT TCTTCTTCTT CATCATCATC TTCTTCCTCC
    TCCTGTTAAT TAAGTTCTTG ATTTCTAAGC TAGCAATTGA GCACACATCG
    ATCGCGAGAG ACGCAGCGGC GCCCGTCTAC CGCGGGGCTA GAGGAATGTC
    GGCACAGATC GTGCCGGCGC CGGAGCATGT GTGCTACGTG CACTGCAACT
    TCTGCAACAC AATTTTCGCG GTCAGTGTTC CAAGCAATAG CATGCTAAAC
    ATCGTGACCG TCCGTTGTGG CCATTGCACT AGCCTGTTGT CAGTGAACTT
    GCGAGGATTG GTCCAAGCAC TCCCAGCAGA AGATCATTTA CAGGACAATT
    TGAAGATGCA CAATATGAGC TTCCGCGAAA ACTACTCTGA ATATGGCTCA
    TCTTCCAGAT ATGGCCGAGT GCCAATGATG TTCTCAAAAA ATGACACAGA
    GCATATGCTG CACGTGCGAC CTCCAGAGAA GAGGCAGCGG GTTCCTTCAG
    CTTATAACAG ATTTATCAAG GAAGAGATCC GGGGGATAAA AGCAAACAAT
    CCTGACATAA GCCACAGAGA AGCCTTCAGT ACTGCAGCAA AGAATTGGGC
    GCATTTCCCG AACATCCATT TCGGGTTAGG CTCCCATGAG AGCAGCAAGA
    AGCTCGATGA GGCCATTGGA GCTCCTAGTC CCCAAAAGGT TCAAAGGCTG
    TATTGATCGA GTACACATGA TGATCGATGG ATCCTACGTG CTTGTTGATC
    TCATGTTGTA AGTAACTTAA TTAAGAAAAA AAGTCTACGC TTATTTATTT
    CTTAAGTATC ATCAGTTAAA TTTGTGAGCG AGTATATAGA TGAGTTGTCA
    TGATCAGTGA GTGATCGTAT GCATGCAGTG CTGAGAATTA AAGGTGTATA
    TGCATGAGTA ACGTTACATG CAGCTAGTGT CGACGCACGT ATGACAGACT
    GAATAAACTC TTCACCATGT TGTTTTTTTA TGTTTGAAAT GAATTAATTA
    ATTGTCC

    Gene models with high sequence identity

    1. AT2G26580.2 [+] show detail - plant-specific transcription factor YABBY family protein
      E-value: 5e-42; Score: 169.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily High mobility group, superfamily 3.5e-07
    HMMPfam YABBY protein 2.1e-75

    See the detailed result >

    AT2G26580.2

    Model type
    Protein coding
    Short Description
    plant-specific transcription factor YABBY family protein
    Computational Description
    YABBY5 (YAB5); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT1G08465.1); Has 458 Blast hits to 449 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR