K16148

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16148

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16148

Determination of introduced cDNA(s)

  • J023044A02 - Rice Full-length cDNAs - Original: J023044A02

    full reading [+] show sequence

    Nucleotide sequence: J023044A02 - full reading 
    TCCCGTTTGC ACCACCACCA ATCTCTCTCT CTCTCTAAGA TCTCTATCTA 
    TCTAAAGATC TGAGCTACAA TTAATTAAAA CCTGATAAGA AGAAGACCCT 
    GAGCTCAATC CCTTCTTATT ATACTATATA TATACTTCTG TATTTGTGCA 
    CAGTGTTGGT ACAGGTATCT GCAGACAGCC ATATCTATCT TTCTAGCTAA 
    TTGGCAATAT GCCTGAAGTC CACTGCTCGT CCTAAGATTT ACTTCTCCAC 
    CCCCCCCCCT CTCCTTTGCT TCTTCTTCTT CATCATCATC TTCTTCCTCC 
    TCCTGTTAAT TAAGTTCTTG ATTTCTAAGC TAGCAATTGA GCACACATCG 
    ATCGCGAGAG ACGCAGCGGC GCCCGTCTAC CGCGGGGCTA GAGGAATGTC 
    GGCACAGATC GTGCCGGCGC CGGAGCATGT GTGCTACGTG CACTGCAACT 
    TCTGCAACAC AATTTTCGCG GTCAGTGTTC CAAGCAATAG CATGCTAAAC 
    ATCGTGACCG TCCGTTGTGG CCATTGCACT AGCCTGTTGT CAGTGAACTT 
    GCGAGGATTG GTCCAAGCAC TCCCAGCAGA AGATCATTTA CAGGACAATT 
    TGAAGATGCA CAATATGAGC TTCCGCGAAA ACTACTCTGA ATATGGCTCA 
    TCTTCCAGAT ATGGCCGAGT GCCAATGATG TTCTCAAAAA ATGACACAGA 
    GCATATGCTG CACGTGCGAC CTCCAGAGAA GAGGCAGCGG GTTCCTTCAG 
    CTTATAACAG ATTTATCAAG GAAGAGATCC GGGGGATAAA AGCAAACAAT 
    CCTGACATAA GCCACAGAGA AGCCTTCAGT ACTGCAGCAA AGAATTGGGC 
    GCATTTCCCG AACATCCATT TCGGGTTAGG CTCCCATGAG AGCAGCAAGA 
    AGCTCGATGA GGCCATTGGA GCTCCTAGTC CCCAAAAGGT TCAAAGGCTG 
    TATTGATCGA GTACACATGA TGATCGATGG ATCCTACGTG CTTGTTGATC 
    TCATGTTGTA AGTAACTTAA TTAAGAAAAA AAGTCTACGC TTATTTATTT 
    CTTAAGTATC ATCAGTTAAA TTTGTGAGCG AGTATATAGA TGAGTTGTCA 
    TGATCAGTGA GTGATCGTAT GCATGCAGTG CTGAGAATTA AAGGTGTATA 
    TGCATGAGTA ACGTTACATG CAGCTAGTGT CGACGCACGT ATGACAGACT 
    GAATAAACTC TTCACCATGT TGTTTTTTTA TGTTTGAAAT GAATTAATTA 
    ATTGTCC

    Gene models with high sequence identity

    1. AT2G26580.2 [+] show detail - plant-specific transcription factor YABBY family protein
      E-value: 5e-42; Score: 169.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily High mobility group, superfamily 0.00000035
    HMMPfam YABBY protein 2.1e-75

    See the detailed result >

    AT2G26580.2

    Model type
    Protein coding
    Short Description
    plant-specific transcription factor YABBY family protein
    Computational Description
    YABBY5 (YAB5); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT1G08465.1); Has 458 Blast hits to 449 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR