K16149

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16149

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16149

Determination of introduced cDNA(s)

  • J023050L08 - Rice Full-length cDNAs - Original: J023050L08

    full reading [+] show sequence

    Nucleotide sequence: J023050L08 - full reading 
    GTCATGATCC GCCGCGTGCA GGGGGAGGTG TGCGCGGCGC TGGAGGAGGC 
    CGACGGGAGC GGCGCCCGGT TCGTGGAGGA CGTGTGGTCG CGCCCCGGCG 
    GCGGCGGGGG CATCAGCCGG GTGCTCCAGG ACGGCCGCGT GTTCGAGAAG 
    GCCGGGGTCA ACGTCTCCGT CGTGTACGGC GTCATGCCCC CCGACGCGTA 
    CCGCGCCGCC AAGGGGGAGG CCGGCAAGAA CGGCGCGGCG GCAGATGGCC 
    CCAAGGCTGG GCCCGTGCCC TTCTTTGCCG CTGGCATTAG CTCGGTTCTT 
    CACCCCAAGA ACCCATTTGC TCCAACATTG CATTTTAACT ACCGCTATTT 
    TGAGACAGAT GCACCGAAAG ATGCTCCTGG TGCACCAAGG CAATGGTGGT 
    TTGGAGGTGG TACTGATTTG ACTCCTTCAT ATATCATTGA AGAGGATGTG 
    AAGCATTTCC ATTCTGTTCA AAAACAAGCG TGTGATAAGT TTGACCCAAG 
    TTTTTACCCG AGATTCAAAA AATGGTGTGA TGATTATTTC TATATTAAGC 
    ACCGTAATGA GCGTCGGGGG CTTGGTGGAA TATTTTTTGA TGATCTTAAT 
    GACTATGATC AAGAAATGCT TCTCAACTTT GCTACAGAAT GTGCGGATTC 
    TGTTGTTCCT GCATACATAC CAATCATTGA ACGCCGGAAG GACACTCCAT 
    TTACTGAGGA ACACAAGGCA TGGCAACAAC TGAGGAGAGG TCGCTATGTG 
    GAGTTCAACC TTGTATATGA TCGCGGTACC ACATTTGGCC TCAAGACTGG 
    GGGGAGGATT GAGAGTATTC TGGTTTCTCT TCCACTGACT GCACGATGGC 
    AGTATGATCA TACACCTGAA GAGGGAACTG AAGAACGGAA ACTTCTTGAC 
    GCGTGCATAA ACCCAAAGGA ATGGCTCGAT CTCTGAACAG CTTGATTTCG 
    TTCGTTCGTC CAATCGTTTG TTAGCTTTCC TCGCACTCTG TAGCCTTACG 
    ATCTCCAAAC ATGTGTAGTT CTTTTACTTG TAGAATCCTG AATAAGTGTA 
    TGATGCAATG CGGGTGTTTT GTTTCATCTG TCGATGCTGT TGAGCTTTGT 
    AACTGTGGTA TCAGTTTCTC TCTTTTTTTC GAGTGAATGA AATATAGCCG 
    GTGAGCCTTT TCCC

    Gene models with high sequence identity

    1. AT1G03475.1 [+] show detail - Coproporphyrinogen III oxidase
      E-value: 8e-156; Score: 546.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Coproporphyrinogen III oxidase, conserved site 0
    FPrintScan Coproporphyrinogen III oxidase 2.2e-93
    FPrintScan Coproporphyrinogen III oxidase 2.2e-93
    FPrintScan Coproporphyrinogen III oxidase 2.2e-93
    FPrintScan Coproporphyrinogen III oxidase 2.2e-93
    FPrintScan Coproporphyrinogen III oxidase 2.2e-93
    FPrintScan Coproporphyrinogen III oxidase 2.2e-93
    FPrintScan Coproporphyrinogen III oxidase 2.2e-93
    HMMPIR Coproporphyrinogen III oxidase 2.3e-210
    superfamily Coproporphyrinogen III oxidase 7.8e-137
    Gene3D Coproporphyrinogen III oxidase 2.5e-127
    HMMPfam Coproporphyrinogen III oxidase 6.4e-130
    HMMPanther Coproporphyrinogen III oxidase 7e-104

    See the detailed result >

    AT1G03475.1

    Model type
    Protein coding
    Short Description
    Coproporphyrinogen III oxidase
    Curator Summary
    Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.
    Computational Description
    LESION INITIATION 2 (LIN2); FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: tetrapyrrole biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260), Coproporphyrinogen III oxidase, conserved site (InterPro:IPR018375); BEST Arabidopsis thaliana protein match is: Coproporphyrinogen III oxidase (TAIR:AT4G03205.1); Has 4884 Blast hits to 4875 proteins in 1228 species: Archae - 0; Bacteria - 2144; Metazoa - 115; Fungi - 160; Plants - 86; Viruses - 0; Other Eukaryotes - 2379 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR