K16204

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16204

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16204

Determination of introduced cDNA(s)

  • J013110L21 - Rice Full-length cDNAs - Original: J013110L21

    full reading [+] show sequence

    Nucleotide sequence: J013110L21 - full reading 
    GATTCTTCTT CTTCTCATCC CAAATCTCTC CTCCTCCCAT CCCGCCGCGC 
    CCGCGAGAGA TCAGCAGCTA CTCGACTCGA CTCGACTCGA ATCGAATCCG 
    AGGGGGGCGG CGGCGAGGGG TGGTGGTGGT CGGCCATGGC GCACCGGGTG 
    GACAACGAGT ACGACTACCT CTTCAAGATC GTGCTCATCG GCGACTCCGG 
    CGTCGGCAAG TCCAACATCC TCTCGCGATT CACCCGCAAC GAGTTCTGCC 
    TCGAGTCCAA GTCCACCATT GGCGTCGAGT TCGCCACCCG CACGCTCCAG 
    GTCCCCCTTC CCTCGCGCGA TCCATCCTCT TCTCTCGCGA CTATGGTTCA 
    GAATAGTAGT GTTGGGGATT TCGCATGTCA CCATTGCGTT CGATGCATTT 
    TTGTTTGATT GGCCTGTCGT GATGTAGGGT TTTTCTGTTT GATATGAGAT 
    GATTACTTCG CGTGTACTGA ACATGAATTA AGTTCAGTTC AATTCTGTGA 
    ATCTGACGAA CGAAATGGGG GGAAAAATAT CTACTACTAT TGATTAATGA 
    TGCACACGTT GAGCTCTGAC TCTTTTTGCA TGTACCACTC GTTTAATAGT 
    AGTATGTCAT TTTGTTGTGC TTCATGGGGC CCTTGGAATG ATTTGAAGAA 
    AGTAACTTTA TTCTTAACTG CACTGGTATC AACATAAATC AGATCCATAG 
    GTACAGAGCT ACAGAGGTAC TAAGTATCAT TTATCATGTC CTTATTTAAT 
    TGATTAAGGG GATATTAAGA AAAACTTGAA TTACATGTTG CTAAAGTCAA 
    TTTGGTAGTC AATGTAGAAG ATGGTGAGCT TTATGCTGTG CTAGTTGAAC 
    TTATGTTGCT AACTTATATA TGGTGCATAA ATCTCTACTT TTTCTGTTGG 
    AAGTTCTACA ACTGCTTTGG CGTATTTCAC TCAACTGTCT TTCAATATTG 
    GAAGTATCTC TGAAACATGC ATTTATATTG CATTGCCTTC TGATTTCGTA 
    TAAATCCAAA CTTTGCAGTT TGTCATCCAT TATTTTGTTT ATACCTTGAC 
    TTGGGTGTAT GGATTATGCG TATCATTATT TGAACAGTAT ATTTCACATT 
    GCACCATATA TTTTGACCAA AGTTTCACAA TGGGCAAGGT CCAAACCAAC 
    CTTTTTTCAC TTAACACCAT ATATCTTTGC ACTAGTTGGC ACTTTGGACT 
    AGGGTTGAGC ACATCAAAGG AAGTTGTCAG AGAAAAGCTA GTTTAAATCA 
    TCAATTTTAG TGCCACAATA TTAGGATAAA TATCTTTAGA AAAAGTTAGC 
    AAATCAGAAA ATAACTTTTT TCAGCAAATC ACACTAAAAC AATGACGTGA 
    ACATGTTTAA AAGTGGCACA AAATGATCTA TACATTGGGG CAAATGAATA 
    AATAGAAAAT AGAACTAGTT AATTACCACA CACTGAAAAG AAGGAAGAAA 
    ACATAAAATG TTTTGCCTTT TATAATTATC CCTATGTAAA TCATATGAAT 
    TTCTCTCATA TTCCCTTGTT TTGCTCACCC CTTGTCCAAA CTGAAAACTT 
    ATGTAAAGAT GTATGATGTT AGTGAAAACA TTGATTTAAC CCTAGTCCAT 
    TATGAAACCT TGGTCAAAAT ATGTGGCCCA TTGTAAAATT TACTCTTATT 
    TCAATAGCAT GTTAAAGTAT ACCGTTATCT TTGTAACGTC ATAAAGCTTG 
    TATTAAGTTC ATAACACCGG CGTGGTAACT ATAATTCTGC AGGAATTTTT 
    TATTTGATTT GCTCTGTTGC TGGAGCATTG CTGATGCATT TACAGAGCTT 
    CTGAAGTCTG AGCAGTGTAT TTATCATTAT TCGGTATACT TGCTCAATTC 
    AAACTGCTTG TTAAAAAATG ATAGCAACTT GCACTGCATA GATTGTACAA 
    GTGGATCCTG TCCAGAAATA TTTTAGGAGA AGGGTAACAT TTTGGGGAGG 
    TCGGAAGGGG GTATGTACCA TTACTCTTTT GTTTTCTTTT AGTGTTGTAG 
    GCCTCTGAAT GTACCTGACG GTTAACACAC ACTGTTTCTA TAGATGAGTC 
    TTTTGATTAA TTTGTTGCAT TTCAGAGAAC TTCTGAATTT TGGGAGCTGT 
    TTTGCCTGTA TAAGGCTCTG ATATAGTGAA CTTGTAATAG ACCTTAACAA 
    TCTAATTTCA CCATACTATA GCGACTTCTT TCATGGCAAA TACTCAAGTT 
    AAATTTATCC ATGATATTGG TATTTTGGCT CACCATATTA GGTATGTTGG 
    TCTTTCTTAT TTAGTGTGGT ATCATGTATA CAGATAGAAG GGCAGACCAT 
    CAAAGCTCAG ATATGGGATA CTGCTGGGCA GGAGAGGTAC CGTGCAATCA 
    CAAGTGCTTA CTACCGGGGA GCTGTGGGGG CACTTCTAGT CTATGACATA 
    ACAAAGAAGC AGACGTTTGA AAACATCCAG AGGTGGCTTC GTGAACTTCG 
    TGATCATGCG GACTCCAACA TTGTCATTAT GATGGTAGGC AACAAATCAG 
    ACCTTAACCA CCTGAGATCA GTTCCAGAGG AAGATGGTCA GGCACTAGCA 
    GAGAAGGAAG GTCTATCATT CCTCGAGACC TCAGCTCTGG AAGCCCTTAA 
    TGTTGAGAAG GCATTTCAGA CTATCCTTAA AGATATTCAT CAAATCATCA 
    GCAAGAAGGC ACTTGCTGCC CAAGAGGCAG CAGGCAGTGG ACCTCCCACT 
    CAAGGAACCA CCATCAATGT TACTGATTCT GCTGTTAACA CAAAGAGAGG 
    ATGCTGTTCT TCCTAGGTGC AACCGAAGAT TTGGTGATGC TGCAAAAGGA 
    AATTCCCATG GATCTTACAG CACTAGGTGT TATGTAGGTC GCTTGACTCC 
    TTTTGGCCTG TAATTCTGGT GGGGTTGTAA TCACAATTTA AATCGCTAGA 
    AAGAAATATT CCTTTTAAGG TAGATACCAT GTGTAGTTGC AAAATTTTGG 
    TAGAGACTGT TGCTGGGCAA GACTTTCTAC AGTTTCATAT CTATATCATG 
    TTTTCTACC

    Gene models with high sequence identity

    1. AT1G07410.1 [+] show detail - RAB GTPase homolog A2B
      E-value: 2e-70; Score: 265.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.2e-12
    Gene3D no description 4.4e-41
    HMMTigr Small GTP-binding protein 1.1e-10
    HMMPfam Ras 9.3e-12
    HMMPfam Ras 4.5e-45
    HMMPanther Rab11-related 3e-33
    HMMPanther RAS-RELATED GTPASE 3e-33
    HMMPanther Rab11-related 1.5e-50
    HMMPanther RAS-RELATED GTPASE 1.5e-50
    HMMSmart Ras small GTPase, Rab type 2.1e-05
    HMMSmart Ras small GTPase, Ras type 2.8e-12
    HMMSmart Small GTPase, Rho type 9.8e-07
    HMMSmart Ras small GTPase, Rab type 1.6e-64
    FPrintScan Ras GTPase 9.1e-13
    FPrintScan Ras GTPase 9.1e-13
    FPrintScan Ras GTPase 3.3e-24
    FPrintScan Ras GTPase 3.3e-24
    FPrintScan Ras GTPase 3.3e-24
    superfamily P-loop containing nucleoside triphosphate hyd 2.7e-15
    superfamily P-loop containing nucleoside triphosphate hyd 6.1e-42
    ProfileScan Small GTPase 11.377
    ProfileScan Small GTPase 26.792

    See the detailed result >

    AT1G07410.1

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog A2B
    Computational Description
    RAB GTPase homolog A2B (RABA2b); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), ADP-ribosylation factor (InterPro:IPR006688), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2D (TAIR:AT5G59150.1); Has 28965 Blast hits to 28914 proteins in 772 species: Archae - 29; Bacteria - 152; Metazoa - 15139; Fungi - 4328; Plants - 3313; Viruses - 20; Other Eukaryotes - 5984 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR