K16204

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16204

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16204

Determination of introduced cDNA(s)

  • J013110L21 - Rice Full-length cDNAs - Original: J013110L21

    full reading [+] show sequence

    Nucleotide sequence: J013110L21 - full reading
    GATTCTTCTT CTTCTCATCC CAAATCTCTC CTCCTCCCAT CCCGCCGCGC 
    CCGCGAGAGA TCAGCAGCTA CTCGACTCGA CTCGACTCGA ATCGAATCCG
    AGGGGGGCGG CGGCGAGGGG TGGTGGTGGT CGGCCATGGC GCACCGGGTG
    GACAACGAGT ACGACTACCT CTTCAAGATC GTGCTCATCG GCGACTCCGG
    CGTCGGCAAG TCCAACATCC TCTCGCGATT CACCCGCAAC GAGTTCTGCC
    TCGAGTCCAA GTCCACCATT GGCGTCGAGT TCGCCACCCG CACGCTCCAG
    GTCCCCCTTC CCTCGCGCGA TCCATCCTCT TCTCTCGCGA CTATGGTTCA
    GAATAGTAGT GTTGGGGATT TCGCATGTCA CCATTGCGTT CGATGCATTT
    TTGTTTGATT GGCCTGTCGT GATGTAGGGT TTTTCTGTTT GATATGAGAT
    GATTACTTCG CGTGTACTGA ACATGAATTA AGTTCAGTTC AATTCTGTGA
    ATCTGACGAA CGAAATGGGG GGAAAAATAT CTACTACTAT TGATTAATGA
    TGCACACGTT GAGCTCTGAC TCTTTTTGCA TGTACCACTC GTTTAATAGT
    AGTATGTCAT TTTGTTGTGC TTCATGGGGC CCTTGGAATG ATTTGAAGAA
    AGTAACTTTA TTCTTAACTG CACTGGTATC AACATAAATC AGATCCATAG
    GTACAGAGCT ACAGAGGTAC TAAGTATCAT TTATCATGTC CTTATTTAAT
    TGATTAAGGG GATATTAAGA AAAACTTGAA TTACATGTTG CTAAAGTCAA
    TTTGGTAGTC AATGTAGAAG ATGGTGAGCT TTATGCTGTG CTAGTTGAAC
    TTATGTTGCT AACTTATATA TGGTGCATAA ATCTCTACTT TTTCTGTTGG
    AAGTTCTACA ACTGCTTTGG CGTATTTCAC TCAACTGTCT TTCAATATTG
    GAAGTATCTC TGAAACATGC ATTTATATTG CATTGCCTTC TGATTTCGTA
    TAAATCCAAA CTTTGCAGTT TGTCATCCAT TATTTTGTTT ATACCTTGAC
    TTGGGTGTAT GGATTATGCG TATCATTATT TGAACAGTAT ATTTCACATT
    GCACCATATA TTTTGACCAA AGTTTCACAA TGGGCAAGGT CCAAACCAAC
    CTTTTTTCAC TTAACACCAT ATATCTTTGC ACTAGTTGGC ACTTTGGACT
    AGGGTTGAGC ACATCAAAGG AAGTTGTCAG AGAAAAGCTA GTTTAAATCA
    TCAATTTTAG TGCCACAATA TTAGGATAAA TATCTTTAGA AAAAGTTAGC
    AAATCAGAAA ATAACTTTTT TCAGCAAATC ACACTAAAAC AATGACGTGA
    ACATGTTTAA AAGTGGCACA AAATGATCTA TACATTGGGG CAAATGAATA
    AATAGAAAAT AGAACTAGTT AATTACCACA CACTGAAAAG AAGGAAGAAA
    ACATAAAATG TTTTGCCTTT TATAATTATC CCTATGTAAA TCATATGAAT
    TTCTCTCATA TTCCCTTGTT TTGCTCACCC CTTGTCCAAA CTGAAAACTT
    ATGTAAAGAT GTATGATGTT AGTGAAAACA TTGATTTAAC CCTAGTCCAT
    TATGAAACCT TGGTCAAAAT ATGTGGCCCA TTGTAAAATT TACTCTTATT
    TCAATAGCAT GTTAAAGTAT ACCGTTATCT TTGTAACGTC ATAAAGCTTG
    TATTAAGTTC ATAACACCGG CGTGGTAACT ATAATTCTGC AGGAATTTTT
    TATTTGATTT GCTCTGTTGC TGGAGCATTG CTGATGCATT TACAGAGCTT
    CTGAAGTCTG AGCAGTGTAT TTATCATTAT TCGGTATACT TGCTCAATTC
    AAACTGCTTG TTAAAAAATG ATAGCAACTT GCACTGCATA GATTGTACAA
    GTGGATCCTG TCCAGAAATA TTTTAGGAGA AGGGTAACAT TTTGGGGAGG
    TCGGAAGGGG GTATGTACCA TTACTCTTTT GTTTTCTTTT AGTGTTGTAG
    GCCTCTGAAT GTACCTGACG GTTAACACAC ACTGTTTCTA TAGATGAGTC
    TTTTGATTAA TTTGTTGCAT TTCAGAGAAC TTCTGAATTT TGGGAGCTGT
    TTTGCCTGTA TAAGGCTCTG ATATAGTGAA CTTGTAATAG ACCTTAACAA
    TCTAATTTCA CCATACTATA GCGACTTCTT TCATGGCAAA TACTCAAGTT
    AAATTTATCC ATGATATTGG TATTTTGGCT CACCATATTA GGTATGTTGG
    TCTTTCTTAT TTAGTGTGGT ATCATGTATA CAGATAGAAG GGCAGACCAT
    CAAAGCTCAG ATATGGGATA CTGCTGGGCA GGAGAGGTAC CGTGCAATCA
    CAAGTGCTTA CTACCGGGGA GCTGTGGGGG CACTTCTAGT CTATGACATA
    ACAAAGAAGC AGACGTTTGA AAACATCCAG AGGTGGCTTC GTGAACTTCG
    TGATCATGCG GACTCCAACA TTGTCATTAT GATGGTAGGC AACAAATCAG
    ACCTTAACCA CCTGAGATCA GTTCCAGAGG AAGATGGTCA GGCACTAGCA
    GAGAAGGAAG GTCTATCATT CCTCGAGACC TCAGCTCTGG AAGCCCTTAA
    TGTTGAGAAG GCATTTCAGA CTATCCTTAA AGATATTCAT CAAATCATCA
    GCAAGAAGGC ACTTGCTGCC CAAGAGGCAG CAGGCAGTGG ACCTCCCACT
    CAAGGAACCA CCATCAATGT TACTGATTCT GCTGTTAACA CAAAGAGAGG
    ATGCTGTTCT TCCTAGGTGC AACCGAAGAT TTGGTGATGC TGCAAAAGGA
    AATTCCCATG GATCTTACAG CACTAGGTGT TATGTAGGTC GCTTGACTCC
    TTTTGGCCTG TAATTCTGGT GGGGTTGTAA TCACAATTTA AATCGCTAGA
    AAGAAATATT CCTTTTAAGG TAGATACCAT GTGTAGTTGC AAAATTTTGG
    TAGAGACTGT TGCTGGGCAA GACTTTCTAC AGTTTCATAT CTATATCATG
    TTTTCTACC

    Gene models with high sequence identity

    1. AT1G07410.1 [+] show detail - RAB GTPase homolog A2B
      E-value: 2e-70; Score: 265.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.0000000000012
    Gene3D no description 4.4e-41
    HMMTigr Small GTP-binding protein 0.00000000011
    HMMPfam Ras 0.0000000000093
    HMMPfam Ras 4.5e-45
    HMMPanther Rab11-related 3e-33
    HMMPanther RAS-RELATED GTPASE 3e-33
    HMMPanther Rab11-related 1.5e-50
    HMMPanther RAS-RELATED GTPASE 1.5e-50
    HMMSmart Ras small GTPase, Rab type 0.000021
    HMMSmart Ras small GTPase, Ras type 0.0000000000028
    HMMSmart Small GTPase, Rho type 0.00000098
    HMMSmart Ras small GTPase, Rab type 1.6e-64
    FPrintScan Ras GTPase 0.00000000000091
    FPrintScan Ras GTPase 0.00000000000091
    FPrintScan Ras GTPase 3.3e-24
    FPrintScan Ras GTPase 3.3e-24
    FPrintScan Ras GTPase 3.3e-24
    superfamily P-loop containing nucleoside triphosphate hyd 0.0000000000000027
    superfamily P-loop containing nucleoside triphosphate hyd 6.1e-42
    ProfileScan Small GTPase 11.377
    ProfileScan Small GTPase 26.792

    See the detailed result >

    AT1G07410.1

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog A2B
    Computational Description
    RAB GTPase homolog A2B (RABA2b); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), ADP-ribosylation factor (InterPro:IPR006688), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2D (TAIR:AT5G59150.1); Has 28965 Blast hits to 28914 proteins in 772 species: Archae - 29; Bacteria - 152; Metazoa - 15139; Fungi - 4328; Plants - 3313; Viruses - 20; Other Eukaryotes - 5984 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR