K16216

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16216

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16216

Determination of introduced cDNA(s)

  • J013156P12 - Rice Full-length cDNAs - Original: J013156P12

    full reading [+] show sequence

    Nucleotide sequence: J013156P12 - full reading 
    GGATCTGTGG ACGAAGACGA ACGTGCTTCG GTTACTTCGC CGGCGGAGTG 
    GTGGTTGGCG GCGGTGGGGG GCGGTGAGCC GGCGACGGTC GGCACCGCAC 
    GTCGAAGCGC CCGGCGTCCG CGGTCTGCCG CTCCCGGTGG AGCTCGGCGA 
    GGTGGCGGAG GCGTTGCAGC CTAGGAGAGG AAGCGCTCGG TTGAGGCGGT 
    GGACGGCGGA GTAGCGGCGG CCGTGGGGGC AGGTGCCGGC GCCACCGCCA 
    CCGCAGCCGG CTTAGGCGGA AGAGACGGCG GGCCTAACCT GCTACTGTCC 
    CGTCCCCTTA CGCGGTCACA AGCCATTGAC GCCAAGCTGG TTCCCCTTGG 
    CCCTTGCCAC TTCCACGCCG GCAGCAACAT CCCTGCTACT TGAGGCCAGA 
    AATGTACACC TCAGATGTTA GTGTTATGGC ATGGAGCATA ACTTGGAAAG 
    TTAAGTGTTC ATATAACTAC ATTTTTTTAT AGGAACTCTC ATATAATATC 
    ATGAGCATTG CCACTATCTG AAAACGAGGC GACAGTGTGG AATTTTGCTT 
    ACCAGGAGGC TCAGCAAGGC GGAGGTACAG GTTCTCACCA AGGCTGGCCT 
    TCTTCTCTGA GTCGACAAGC TCCCCTGTCC AAACCAAGCA TCTTGACGGG 
    TCAGCCATGG TGCCGCCACT GCTCAAGTTG GCGTAAGCAT ATGCCTTGCA 
    AGAGCAGTTG CTGCTGCACT CGGCCGCGCA CTGGTCGAAG CTCCTGTTCC 
    GGATCTGCAA GAACTTGTCG GGGACCTTCA TGTCAGGCAA TGACACGAAG 
    CGGTGACCGC CCTCTCCGCA TCTCAGCTCT TCCTTTCTCC GGCATCCTGA 
    TTGCGAGATG CTGGGATCTA CAGGCTCGAA CCCATCGAGG CACCGGCACG 
    CCGGGACGGC CCCCGTGAAG TCGCAGTAGC CAAACGGGCC GCACGAGCCA 
    TAGACCTCGC AGCTGCCGGC GGCGGGGCGC TGGAAGATCA ACATCCATGA 
    CGACGAGCTG TTGTCCCAGC TCAGGAACAT CATCGTGCCC GTGCTGTCAA 
    GTGTGAGGCG TGTGTAGATG GAGCTGTCGG AGACAGTGTA TGAGTAGTAG 
    AGCTTGTTCC CTGAGTCGAT GAGTGTTTGA TACATGAATA AGCTGCTGTT 
    ACTCGGATAC TGGGCGCCGG ACACCGTCAC GCTGGTTCTG ACGCCGTTAC 
    GGCAGTATGG CTTGGTCCCG TTCCAGGTCA TGCCCTGGAG GTCCGAGCTG 
    GGGTCGAGGC TGAAGGAGAA ATCTCCAGTG GATGGGTCAT CATGGCTCCT 
    CCACGCAGTG AGGCGTCCGA TGATCTCGGA CTTGTAGCTC ATCAAGAACA 
    TCATGCCTGC GAGGATGGTA TCAGTCGGGT GATCGAAGCT TTGCCATATG 
    TCGGTGCCGT TTGGCAACCG GAGAACGAAG TTCCCCGTGT CGAGCAGCAC 
    GGCGGAGGCT CCGGTGACGC TGATCTTGGT TGTCCAAAGA ATGTGGCCTT 
    GGGAGTCCGA CAGCACCATG CCTGAGCTGT TGGTGATGGC AAGGGTCGCT 
    GACGAAGGGG TGGTGATTGG GTTGTCGCGG TTGGCAACCC ACACAACGGT 
    GCGCTGGGGG ATGTTGTGGA ACCAGACTCC AACATAGAGG CTATTGCTGA 
    AGTTGGCCGG GGGGAAGAAG CCGAGGGCAA AGATGCCGCC CTTGGAGATG 
    AGCATCTCGC TGGGAAAGAT TGGCTTTCCC AGTGTCAGCT GGTCATCGGT 
    TTTGCATAGA GGAATCGAGA GCAGCAGGAG GAACATGAGA AAATAGACCA 
    TATTGCCTGT TAGACTTTCT GCTTCGTTTG CTTGTCATGG GTCAAGTTAT 
    ATCTTTCATT CATAATGCAG ATATGGACTG GTGTAGTTGG AGTTCAATTC 
    CCTTGCTGTC ACCTCATCTG AAGATCAGGA GAAATGTGAG ATGGCTAAGT 
    CCTGATTCAG ACTCATGGAC AGAGACAGTA AAGGACCCTG TCTGAATTCT 
    GATGACCAGG TCACCTGGTC ATGATACTCC AAGTCGTGTG ACAATGCTGC 
    ACGAAAACGA AAGAATGCTG CTGCCATGGA CTTTGGAGTG ATAGGCTAGT 
    GCAGGCAAAA GCGAAACCTC ACGTGCGTTC CATGGCTCCA CGTGGTGTCA 
    CAGGCCCTTG ATGCTGCCAC TCTCCATTTG AAGAAGTACA ATAGGTATTA 
    AAACCAATTA TGATTTTTAT CCCAAGTTAT ATATATATTT TTTTGAAGG

    Gene models with high sequence identity

    1. AT1G65790.1 [+] show detail - receptor kinase 1
      E-value: 5e-59; Score: 226.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Curculin-like (mannose-binding) lectin 1.5e-29
    HMMPfam Curculin-like (mannose-binding) lectin 3.5e-28
    HMMPfam S-locus glycoprotein 7.2e-23
    HMMPfam PAN-2 domain 1.3e-21
    HMMSmart Curculin-like (mannose-binding) lectin 3.7e-30
    HMMSmart Apple-like 2.5e-08
    ProfileScan Curculin-like (mannose-binding) lectin 17.172
    ProfileScan Apple-like 10.419
    HMMPanther RECEPTOR-LIKE PROTEIN KINASE-RELATED 3.8e-06
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.8e-06

    See the detailed result >

    AT1G65790.1

    Model type
    Protein coding
    Short Description
    receptor kinase 1
    Curator Summary
    An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain.
    Computational Description
    receptor kinase 1 (RK1); CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), S-locus, receptor kinase (InterPro:IPR022126); BEST Arabidopsis thaliana protein match is: receptor kinase 2 (TAIR:AT1G65800.1); Has 122289 Blast hits to 120537 proteins in 4566 species: Archae - 105; Bacteria - 13863; Metazoa - 44387; Fungi - 10421; Plants - 35006; Viruses - 434; Other Eukaryotes - 18073 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR