K16221

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16221

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16221

Determination of introduced cDNA(s)

  • J013052G16 - Rice Full-length cDNAs - Original: J013052G16

    full reading [+] show sequence

    Nucleotide sequence: J013052G16 - full reading
    GAACCAACCA ACCAGCCCCG CCTCGAGCCA AGCAAAACCC TAGCAAAGGG 
    GAGGGGCAGC GCCGGCGGGG GCGACGGGGC GTGGGGGCGA CGGTGGGCCA
    TGGACGCGAT CCGGAAGCAG CTCGACCAGC TCATGGGCGC CAACCGCAAC
    GGCGACGTGC GGGAGGTCAG CCGCAAGTAC TACGACCGCG ACGTCTGCCG
    CCTCTTCCTC GCCGGCCTCT GCCCCCACGA CCTGTTCCAG CTCACCAAGA
    TGGACATGGG GCCATGCCCG AAGATGCACT CGCTGCAGCT GCGCAAGGAA
    TATGAAGAAG CGAAAGCCAA AGGTATGGAC AATTATGACC GTGAATTGGA
    AGAAACTATA GAAAGACTAA TATCGGAGTG TGAAAGGAAG ATTCAGAGAG
    CCCTTAAACG TCTAGAGGAG GACGATGCCA AGGCAGCTAT AGCAATTTCC
    ATCACTGAAG TCACACAGAG TAAAGAAGTG ATTGAGTTCT CCAAACAAAT
    CAAGGAGAAG ATGAAGGAGA TTGATGCTTT TGATCTTGAG GGAAACACTG
    AGGGCAAAAT TCGGGCTACT GAAGAGGTTG ACAAGCTCAA GGAACAGAGG
    GCTGAAGAGC AGGCAAAGCA TCTACTTGAA GCTTTTAATA AGGACCGTGT
    CTCACTAATG ACTTCACTCC AAACTGCTAA TCAATCAATT CCACCACCAC
    CTGTTGCTGC TGCTCCAGAT GCACGCACAC AAGAAATGAT TGATGAAAAA
    CTCAAAAAGG CAGAAGAACT AGGTGAGAAT GGAATGATCG ATGAAGCTCA
    GAAACTTTTG GATGAAGCAG AAGCTCTAAA GAAGCTTGGT GCTCGGCCAC
    AGCCTGTTCC GGACTCTGCA AAGATGTCAA CTCACGTTCA GATTACTGAT
    CAAAAGTTGC GCCTGTGTGA CATATGTGGA GCATTCTTGA GCGTATATGA
    CAGTGACCGG CGTTTGGCAG ATCATTTTGG AGGGAAACTT CATATGGGTT
    ATATGCTGAT ACGTGAGAAG TTATCCGAAC TGCAGGAAGA GAAAAACAAA
    AGGCGCAAGA TAGACCGAGC TGAGCATGAG AGAAGGTCCA GGGACAGGAG
    CCTGGAACGT GACAGAGCAT CTAGCAAGGA TCGCCATAGA GGAGATCGAG
    GCAGCAGCCG TGATAGGGAC AGGGATTATG ACCGCAGGAG AAGCCATGAT
    CGATACCATG ACAGAGAAAG TAGGTCGGAC AAGGACAGAG AATCAGGGAG
    ATCCCATAGT TATGATTCAA GGGGCTACCG AAGGTCACGC TCCCCTAGGG
    ACCGTTCCAG AGACTATGAT CGATACGGGC GTGACGACCG TCGGCATCGA
    CGCTAGACAC ATGGTCGAGG GTTTTAGCAT GAACCGGATC GTTTGGTGTT
    TCAATTCAGA GGTTCATGTG GGAAAGATGC TTATTTCCTG AGTATATCCA
    TTTGCACTAC CACCAATGAA CATGGAACTG ATGTAATAGC TACGTGAAGT
    TAGGATTCTA GTTGATGCTG ATCATGTACA ACCAAAATTG TGTTAAAGAG
    TTGTGGTATG TCTCAGATCA TCCAAATTTA AATTTGAAGA TATCCTCTCC
    TCTTGAAACC C

    Gene models with high sequence identity

    1. AT5G17440.1 [+] show detail - LUC7 related protein
      E-value: 2e-118; Score: 423.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther UNCHARACTERIZED 5.3e-223
    HMMPanther LUC7 related 5.3e-223
    HMMPfam LUC7 related 2.4e-47
    HMMPfam LUC7 related 3.7e-40

    See the detailed result >

    AT5G17440.1

    Model type
    Protein coding
    Short Description
    LUC7 related protein
    Computational Description
    LUC7 related protein; CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: LUC7 related protein (TAIR:AT3G03340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR