K16227

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16227

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16227

Determination of introduced cDNA(s)

  • J013000J24 - Rice Full-length cDNAs - Original: J013000J24

    full reading [+] show sequence

    Nucleotide sequence: J013000J24 - full reading 
    GCTTTCCCCT TCTCCGCTCC TCCTCCCCCT CGCGAGCTCG GCGGCGGGCG 
    GCGGCGGCGG CGCGATGAAG GTCTCCATCA AAACGCTCAA GGGCTCCAGC 
    TTCGAGATCG ACGTCGAGCC CACCAGCAAG GTCAGTGATG TTAAAAAGCT 
    CATCGAGGTT ACGCAAGGAG ATAATGTCTA CCCCGCTGAT CAGCAAATGC 
    TGATCCATCA AGGGAATGTC CTTAAAAACG ACACAACACT TGAAGAGAAC 
    AAAGTTGTTG AGAACAACTT CATTGTGATA ATGTTATCTA AGAAGGGATC 
    ATCAAGTGCT GCTTCAAGTA CAGCTAAGGA GCCCACAAAA CAGCCCTCAG 
    TTGACCGGGC GATACCCACT GCGCCTGCAA CCCAACCACC TGCTCCACCA 
    GCACCTGTTA GCGAGCCTGT GACTGCACCA GTTCCAACTG CAACAACTGC 
    TTCAGCTCCA GCAGCTGCTG TCACCGCTGC ATCCACCGAA GCAGATAATT 
    ATGGTCAAGC TGCGTCGAAC CTTGTTGCTG GAAGCAATTT AGAAGGGACT 
    GTTCAGTCAA TTCTTGAAAT GGGTGGAGGA GCTTGGGACC GTGACACTGT 
    TATGCGTGCT CTGCGAGCTG CATACAACAA TCCAGAACGG GCTGTGGAGT 
    ATTTGTACAC CGGGGTTCCT GAGCAAGCTG AGGCCCCTGC TGCAGTTCAA 
    GCACTTCCTG TCCCTGCTGC AGTTCAAGCA CTTCCTGTCC CTGCTGCAGT 
    TCAACCAGTT GACCCAAGCC AGGCTCCCCA ATCAGCTCAA CTTTCAATTC 
    CATCATCTGG ACCCAATGCC AATCCATTGG ACCTGTTTCC TCAGGTCCTT 
    CCAAATGCTT CTGCAAATGC TGGTGGTGGA AATCTTGATG TTCTGCGAAA 
    CAATTCACAG TTCCGTGGCT TGCTTTCTTT GGTGCAGGCT AACCCTCAAA 
    TTCTGCAGCC TTTGCTTCAA GAGTTGGGGA AACAAAATCC ACAGATTTTG 
    CAACTGATTC AGGAAAACCA GGCTGAGTTC CTGCGCTTAA TCAACGAACC 
    TGCAGAGGGA GCTGAAGGGA ACTTGCTAGA CCAGTTTGCT GCGGGAATGC 
    CTCAAACAGT GGCTGTCACA CCTGAGGAGA ACGAAGCCAT ACAACGTCTG 
    GAACAAATGG GGTTTGATCG CGATCTGGTC CTGGAGGTAT TCTTCGCGTG 
    CAACAAGGAT GAGCTGTTGG CCGCAAACTA TCTCTTGGAC CACATGAACG 
    AGTTCGACGA CGACGCCCCT GAACCACCGC AATAAGATGA CTGACCCGTT 
    TTTAATGATA CATGCCAGTC ACACAAGAGA CATTGGGTTG CAAACAGTGG 
    TCACCAAGAC TGGTGATTAT CCCCGTTTTA GAACATCCAA ATCCACCCAT 
    CCATCCAGGC GTGAGAAAAA TGTTTTTGAG CTTCTCTCAT CATCATTCTT 
    TTTTCTGCTT TGGGATTTTT ATGATGATTA GTACATACTC TAGATGACAT 
    TTACAGACTA CATATAACCA AATGTT

    Gene models with high sequence identity

    1. AT5G38470.1 [+] show detail - Rad23 UV excision repair protein family
      E-value: 3e-101; Score: 366.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr UV excision repair protein Rad23 1.4e-126
    Gene3D no description 1.7e-21
    Gene3D no description 4.9e-15
    Gene3D XPC-binding domain 5.7e-20
    Gene3D no description 2.1e-15
    superfamily Ubiquitin-like 8.9e-23
    superfamily XPC-binding domain 1.1e-19
    superfamily UBA-like 2.4e-12
    superfamily UBA-like 1.7e-09
    FPrintScan UV excision repair protein Rad23, C-terminal 2.6e-30
    FPrintScan UV excision repair protein Rad23, C-terminal 2.6e-30
    FPrintScan UV excision repair protein Rad23, C-terminal 2.6e-30
    FPrintScan UV excision repair protein Rad23, C-terminal 2.6e-30
    HMMPfam XPC-binding domain 1.2e-21
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 3.7e-11
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 2e-07
    HMMPfam Ubiquitin 8e-17
    HMMPanther UV EXCISION REPAIR PROTEIN RAD23 1.9e-142
    HMMSmart Ubiquitin 5.7e-17
    HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 0.09
    HMMSmart Heat shock chaperonin-binding 1.8e-07
    HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 1.9e-07
    ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 12.161
    ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 13.92
    ProfileScan Ubiquitin supergroup 18.824

    See the detailed result >

    AT5G38470.1

    Model type
    Protein coding
    Short Description
    Rad23 UV excision repair protein family
    Curator Summary
    Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.
    Computational Description
    RADIATION SENSITIVE23D (RAD23D); FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: response to cold, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR