K16235

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16235

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16235

Determination of introduced cDNA(s)

J023097B21 - Rice Full-length cDNAs - Original: J023097B21

full reading [+] show sequence

GATCGACCTC CCCTCCCCTT GCAGATCTGA TCGGCGACGG CGATCGCCGG 
ACCACCACCG CCCGCCGCCA TGGCGCTCAC CCTCCGCAAG AAGCAGCTCG 
ATTCGATCGT GAGGATGCTG CATCTGAACC AGCAGCTGCA GGGCTCGCCG 
GACGGGGTCG GCGGAGGGGT GGGGTCGGCG GAGGAGGAGG AGGCGTACAA 
GATCCTGGTG ATGGACTCCC CCTGCGTCGC GCTCCTCGCG CCGGTGCTCC 
GCGTCGGGGA GCTCCGGAGG CACGGCGTCA CGCTCCACCT CAACATCGAC 
AAGGCGAGGC AGCAGGTCCC CGACGCCCCC GCCGTCTACC TGCTCCGCCC 
CACCGCCGCC AACGTCGACC GCGTCGCCGC CGACGCCGCC GCGGGCCTCT 
ACGCCTCCTT CCACCTCAAC TTCTCCACCT GCGTCCCGCG GGCCCTCCTC 
GAGCGCCTCG CCTCCGCCAC CGCCGCCTCC CGCTCCGCGC ACCGCGTCGC 
CCGCGTCGCC GACCAGTACC TCGACTTCGT CTGCCTCGAG GAGGGGCTCT 
TCTCCCTCGC CCAGCCCAGG GCGTACGTCG CGCTCAACGA CCCCGCCGCC 
GCCGAGGCCG ACATCACCGC GCTCGTCGAC GCCATCGCGC TCGGCCTCTT 
CTGCGTCGTT GCCACGCTCG GCGCCGTGCC CGTCATCAGG TGCGCTGGCG 
GCGGGCCGGC GGAGATGGTC GCCGCCGCGC TTGACGCCCG CCTCCGCGAT 
CACCTCATCG CCAAGCCCAA TCTCTTCACT GAGGCCGCGT CCACAGCAGT 
TGCATCCTTC CAGCGGCCAC TCCTGTGCCT GTTTGATAGG AATTTCGAGC 
TTTCGGTGGG GATCCAGCAT GATTGGAGCT ACCGCCCGTT GGTCCACGAC 
GTGCTCGGCC TGAAGTCGAA CAAATTGAAG TTGCCAGAGA AGTATGATTT 
GGATGACACT GATCCGTTCT GGGTGGCAAA CAGCTGGTTG CAATTCCCCA 
AAGTGGCAGA GGAAATTGAG GCCCAGCTTG CCAAGTACAA GCAGGATGTG 
GATGAGGTGA ACCAGCGCAC AGGTGGTGGC AGGGATGGTG TTGAGTTTGA 
TGGCACCGAT CTCATTGGCA ACACCAGGCA TCTCATGAAT GCTGTGAACT 
CGCTCCCAGA ATTGACGGAA CGGAAGAAGA TGATTGACAA GCACACGAAT 
ATTGCAACGG CGCTGCTTGG CCATATCAAG GGGAGGTCTC TGGATGGATA 
TTTCGAGTGT GAGAATAGTA TGCTCGTGGA TGGCACCTTG GACCGGACCA 
AGTTGATGAA CCTGCTGAGA GGGAACGGCA CCAAGGAGGA TAAGCTCCGA 
CTGGCTGTGA CCTACCTGCT TTCCTTCGAG ACACCAGTGC CATCTGACTT 
AGAGCAGGTT GAGGCCGCTC TGCGTGAGTC AGAAGTGGAC ATGTCCGCGT 
TTCAGTATGT AAAGAGAATA AAGTCACTGA ATTCCCAGTT CGCTGGTGCA 
TCAAACACCG CAAGCAAGGT TAACATAGTT GATTGGGCAG AAAAGCTTTA 
TGGGCACTCC ATTAGTGCCA TGACAGGTGT GAGGAATTTG TTATCAGATG 
GAAAGCAGCT GGCCGCTACA AGGGCTGTAG AAGCTTTGAT GGAGGGGAAA 
CCAAATCCTG AAGTTGACAA CTACTTACTA TTTGATCCAC GGGCCCCTAA 
ATCAGGAACT GCTGGACAGT TCAGAGGACC CTTCAGAGAG GCCATTGTTT 
TCATGATTGG TGGTGGAAAT TACATTGAAT ACAGGAGCTT GACAGAGCTA 
ACGCAACGTT CACAGACTAC CAAGCAAGTC ATATATGGAG CAACTGAAAT 
TCTTAATGGG GTGGAGTTTA TTCAGCAACT CTCAGAACTG GGGCAGAAAG 
CAGGGTTGGG TGGTGTCAGC AGCAGCCTGC CACCCCAGTA AACAGGCTCC 
TTCAAGATAT TTTGATGTTA ATGGGTGTTT AAAGCTTCCT AGATCAGTGG 
TATCTTACCA GACTTTTGAT GTTAAAGAGT GGTCCAGACT GCATAGATCA 
ATGGTATCCA ATTTCC

Gene models with high sequence identity

AT2G17980.1 [+] show detail - Sec1/munc18-like (SM) proteins superfamily
E-value: 0; Score: 676.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	5.5e-34
Gene3D	no description	2.2e-66
Coil	coiled-coil	0
HMMPanther	SLY1-RELATED	3.9e-245
HMMPanther	Sec1-like protein	3.9e-245
HMMPfam	Sec1-like protein	1.7e-131
superfamily	Sec1-like protein	9.2e-152

See the detailed result >

AT2G17980.1

Model type: Protein coding
Short Description: Sec1/munc18-like (SM) proteins superfamily
Curator Summary: member of SLY1 Gene Family
Computational Description: ATSLY1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking involved in exocytosis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT4G31740.1); Has 1583 Blast hits to 1569 proteins in 233 species: Archae - 0; Bacteria - 15; Metazoa - 661; Fungi - 409; Plants - 204; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).
Link: InterPro Scan - TAIR