K16241

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16241

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16241

Determination of introduced cDNA(s)

  • J033128K05 - Rice Full-length cDNAs - Original: J033128K05

    full reading [+] show sequence

    Nucleotide sequence: J033128K05 - full reading
    GAGTGCTCGG CACGTCGGTT GTTGCTGTTG CTGCTGCTGC TCCTCCCGTT 
    TTCCGATCGC AGCCATGGGA ACCCGCAGCG TGGCCTTGGT GCTCCTCGCG
    GCCGTGCTGC TCCAAGCCCT CCTCCCCGCT TCGGCGGCGG AGGGTTTGGT
    GCGGATCGCG CTGAAGAAGC GCCCGATCGA CGAGAACAGC CGCGTCGCCG
    CGCGACTCTC CGGCGAGGAA GGGGCGCGCC GGCTGGGCCT CCGCGGCGCC
    AACTCCCTTG GCGGCGGCGG GGGTGAGGGC GACATCGTGG CGCTGAAGAA
    CTACATGAAC GCGCAGTACT TCGGGGAGAT TGGCGTCGGC ACTCCGCCGC
    AGAAATTCAC CGTCATCTTC GACACTGGCA GCTCCAACCT CTGGGTGCCG
    TCGGCCAAGT GCTACTTCTC GATTGCGTGC TTCTTCCACT CTCGCTACAA
    GTCCGGACAG TCGAGCACTT ATCAGAAGAA TGGAAAACCA GCTGCCATTC
    AGTATGGCAC TGGTTCAATT GCTGGGTTTT TCAGCGAGGA TAGTGTTACA
    GTAGGTGATC TGGTTGTGAA AGATCAGGAA TTCATTGAAG CTACCAAGGA
    GCCAGGTCTT ACTTTCATGG TTGCAAAATT TGATGGCATT CTTGGGCTTG
    GATTTCAGGA AATATCCGTT GGAGATGCAG TACCTGTGTG GTATAAGATG
    GTAGAGCAAG GTCTTGTCAG TGAGCCTGTT TTCTCCTTCT GGTTCAACCG
    TCATTCTGAT GAAGGAGAAG GTGGTGAAAT TGTGTTTGGA GGAATGGATC
    CTAGCCACTA CAAGGGCAAC CATACATATG TTCCAGTCTC TCAGAAGGGA
    TATTGGCAGT TTGAGATGGG CGATGTCCTG ATTGGAGGAA AGACCACAGG
    ATTTTGTGCT AGCGGTTGTT CAGCTATAGC AGACTCTGGA ACATCATTGC
    TTGCTGGCCC CACAGCCATA ATCACTGAAA TCAATGAGAA GATCGGTGCT
    ACTGGGGTAG TCAGCCAAGA ATGCAAGACA GTTGTTTCTC AATATGGACA
    ACAGATCCTA GATCTGTTGC TTGCTGAGAC ACAGCCATCA AAAATCTGCT
    CTCAGGTTGG TCTGTGTACT TTTGATGGGA AGCATGGTGT TAGTGCTGGA
    ATTAAGAGCG TAGTAGATGA TGAAGCTGGG GAATCGAATG GTCTCCAAAG
    TGGTCCCATG TGCAATGCCT GTGAGATGGC TGTTGTATGG ATGCAGAACC
    AACTTGCACA GAACAAGACT CAGGATCTCA TCTTGAACTA CATTAATCAG
    CTCTGTGACA AGCTCCCAAG TCCAATGGGA GAATCATCTG TGGACTGTGG
    CAGCCTTGCA TCCATGCCTG AGATTTCATT CACCATTGGA GGCAAAAAGT
    TTGCACTGAA GCCAGAAGAG TATATTCTGA AGGTTGGTGA AGGAGCTGCT
    GCCCAGTGCA TCAGTGGATT CACAGCCATG GACATCCCTC CTCCCCGTGG
    TCCTCTCTGG ATCCTGGGTG ACGTTTTCAT GGGTGCCTAC CATACCGTGT
    TCGACTACGG CAAGATGAGG GTTGGCTTCG CGAAGTCGGC CTAAACGTGT
    TGTTGTCACG TTCCTAATGA CGAGGTGGAC GCATACGCCG AGAGAAGAAG
    ACCGTAGCTT TTAACTAGCG TATTTATCCG GCGATGTGTG TATATATGCA
    TGCTACATAA CATGTTTATG TTTTCCAAGG CCTGAGATGG CGCCCGTCTA
    TTTTAGCTTG GCAAGAATAT CTCGGACCAG TCTCTGTTCG AATTCTCGTA
    CTGATATGTG AACTTCTG

    Gene models with high sequence identity

    1. AT1G11910.1 [+] show detail - aspartic proteinase A1
      E-value: 0; Score: 709.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Peptidase A1 2.9e-29
    FPrintScan Peptidase A1 2.9e-29
    FPrintScan Peptidase A1 2.9e-29
    FPrintScan Peptidase A1 2.9e-29
    HMMPanther ASPARTIC PROTEINASE-RELATED 2.8e-251
    HMMPanther Peptidase A1 2.8e-251
    superfamily Peptidase aspartic 7.1e-127
    superfamily Saposin-like 4.3e-29
    PatternScan Peptidase aspartic, active site 0
    PatternScan Peptidase aspartic, active site 0
    Gene3D Peptidase aspartic, catalytic 6e-86
    Gene3D Peptidase aspartic, catalytic 1.1e-20
    HMMSmart Saposin B 0.0063
    ProfileScan Saposin B 13.464
    ProfileScan Saposin B 12.419
    HMMPfam Peptidase A1 5.1e-131
    HMMPfam Saposin-like type B, 1 4.2e-15
    HMMPfam Saposin-like type B, 2 4e-14

    See the detailed result >

    AT1G11910.1

    Model type
    Protein coding
    Short Description
    aspartic proteinase A1
    Curator Summary
    Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
    Computational Description
    aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR