K16250

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16250

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16250

Determination of introduced cDNA(s)

  • J033130J12 - Rice Full-length cDNAs - Original: J033130J12

    full reading [+] show sequence

    Nucleotide sequence: J033130J12 - full reading 
    GGTCCTCATC TCATCTTCTC CTCCAAATTC CTCTTCCACA TTTCCTCCTC 
    CTCCTCTTCT TTCTCTCAAG AAAATCAGTA GCTAGCCATG GCGTCTTCTT 
    CTTCTCTCAG GAGCACCAGC TGCCTCGCCT CCGCCGCGGA GACCGACGCC 
    GACAACCTCT GCCTCCGCCT CGGCCCGCCG GGAAGCAGCA TCACCACCAC 
    CACCACCACC GGCGGCGCCG ACCCGGCGGC GAAGAGGTCC CTCGGGGCGA 
    AGCGGTCGCT GGAGAGCACG GACAGCATGG CCTCCGGCAC CGGAACTTCC 
    GCCGCCGGCG ACGAGCACGA CGACGACACC GCCGCACCGG CCAAGGCACA 
    GGTGGTAGGA TGGCCACCAG TGAGGGCATA CCGGAGGAAC ACCTTCCATC 
    AGGCCGCCGC CGCCGCCGCC GCAACCAAGA AGGGTGGTGA TGAGAAACAG 
    AAGCAGCAGC AGCAGGGAGG AGGGCTGTAT GTGAAGGTGA GCATGGATGG 
    GGCACCATAC CTGAGGAAGG TTGATCTCAA GATGTGCAAG GGCTACAGGG 
    AGCTGAGGGA GGCACTGGAT CTCCTCTTCA CCAAGTGCTT CTCTGCAACC 
    GCCTCTGACG GATGCAGCGA TGGCCAGTTC GCCATTGCCT ACGAGGACAA 
    GGACGGTGAC CTCATGCTTG TTGGAGATGT GCCCTGGGAA ATGTTCATCT 
    CTTCCTGCAA GAAGTTGAGG ATCATGAAGG GCTCTGAAGC CAGGTGATGG 
    TCTGATGGAT GATCAAAGGA GACAAATCAC AGGCTAGGAC ACACCACATG 
    AGAAGATGGA TGATGAATCA GAGATCATGA ATCACATGGC ATGAGATGAA 
    TGGGATCAAG AAGGGAGCAG AGGACTAGAA GAGCCCTGAT GGCTTGTGCT 
    CTTCGTTGCT GTACAGAGAG AGTTTAGGCA CTGCCTTGTT TCAGTGTTTC 
    TGAATCCAAG AGGGACAAGA TGTATGAACT GTGTATATAG TCTTTTAATT 
    AGGCTCATTT CTTTTTTCAG TTTGAGTTTT GTACTGTATG AGCGAAGGCT 
    GGAAAATATG AAAAAAGGGA GAAATTTGAC CTAAGCTTGG TCATTTCTCC 
    ACACCAAAGA TTCCTTGTTT CTCTGTGTTC ATATCATAAA TACAGTACCA 
    AGCCAGTATT TGTC

    Gene models with high sequence identity

    1. AT1G04240.1 [+] show detail - AUX/IAA transcriptional regulator family protein
      E-value: 1e-32; Score: 137.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam AUX_IAA 3.9e-55
    superfamily CAD & PB1 domains 5.1e-11
    ProfileScan Aux/IAA-ARF-dimerisation 28.417

    See the detailed result >

    AT1G04240.1

    Model type
    Protein coding
    Short Description
    AUX/IAA transcriptional regulator family protein
    Curator Summary
    SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro.
    Computational Description
    SHORT HYPOCOTYL 2 (SHY2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to cyclopentenone, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: AUX/IAA transcriptional regulator family protein (TAIR:AT5G43700.1); Has 1823 Blast hits to 1821 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1822; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR