K16306

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16306

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16306

Determination of introduced cDNA(s)

  • J013001H17 - Rice Full-length cDNAs - Original: J013001H17

    full reading [+] show sequence

    Nucleotide sequence: J013001H17 - full reading 
    GGGTTCGTCT AGTCGTCTTC CTACTCTCCT CCGATCTCCA ATTCTTATCC 
    AACCCATGGT GCTTGGCTCC CCGGAAGTCG GGATGGAGGA TTCGTCGGCG 
    ACTCACCTCT CCGACGAGGT GCAGGATCCA GGTCGAGGAA GCTCAGATGC 
    TTCTGTTCGT ACTTCTTTGC GAGATTCGAC AGGAAAGGAG GCTGTTGCGG 
    CCGTTGAACC GGTGAGGGAG GAGCTGGTTC AGAGCGCGGT CGGTTTTCTG 
    AAACACCCAA AGGTAGTGGC CTCTTCTGAT GTCCAGAGGC GTTCTTTCCT 
    TGAGAAGAAA GGGCTCACCG TGGATGAAAT CGATGAGGCA TTTCGACGTT 
    TACTTAGCCC ATCTTCAAAC TCCATGAGTC CAAATTATTG CACATATCAA 
    GGGGTATCTG ATCATTCTTC AAAAATCACA CAGGAGAATC CTTCAACAGT 
    TACAAAATGT ATGGATGATG ATTCAGGGAG ACCTGAGCCT GAAACTGAAT 
    CTGTGGATCC TGTGGTGCCT CGCCACCCAA AATCATATAT GGAGATCATG 
    GAAATGATAC AAAGGGGAGA GCGGCCAGAT GATATACAGG ACATTAATGA 
    TGACCCTCCA AACCCTTATC AACCAATCTC GGAATCCCGC ATGGCACCAA 
    AGCCCAAGCC ATGGGAAAAG CAGGGTCAAG AAAGTTCCAT CTGGGAGTTG 
    AAATCTCAGT CAATGGACAC CATCGAATCG AGATCAGAAA TTCAACTTGA 
    CAGCGCCAAC CAATTTACTG AAACGGAGAA TAGATCAAAT CAAGGGGACT 
    CACTATTGCT GGAAGAAACG GTTGCAGGTT CTGAAGCTCA CACAGATGAT 
    GCTGCCTCGA CAAAGTCGTA AATGCAAAAG CACGTGATGA TGGAATTGAA 
    CATGCTGGGA AACTATTTCA ACATATACTT AGCCAAAAAG CTCGAATTTC 
    TAGTGCAACA GTTTTCTGAA ATTCTCTGAA CCTGCTTTCT CTGAGCTCAC 
    TGATCTGCGT ACTTCCCTAT TGTTGGAATC AGATTTAGCA GGCACAAAAG 
    ACCTCCCAAT TTTCGTTAGC TGGAACAGTT ATACAATCTG TATAATGTAA 
    TCATGAAAAA TATACAAACA ACAACATGAA ATGTTGTGAC TTGTGAGGCT 
    C

    Gene models with high sequence identity

    1. AT5G62810.1 [+] show detail - peroxin 14
      E-value: 0.0000003; Score: 53.10

     

    InterPro Scan Digest

    See the detailed result >

    AT5G62810.1

    Model type
    Protein coding
    Short Description
    peroxin 14
    Curator Summary
    mutant has a defect in the intracellular transport of thiolase from the cytosol to glyoxysomes (formerly known as ped2)
    Computational Description
    peroxin 14 (PEX14); FUNCTIONS IN: protein transporter activity, protein binding; INVOLVED IN: peroxisome organization, protein targeting to peroxisome; LOCATED IN: cytosol, peroxisome, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisome membrane anchor protein Pex14p, N-terminal (InterPro:IPR006785); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G62800.1); Has 366 Blast hits to 354 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 94; Fungi - 149; Plants - 89; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR