K16307

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16307

Determination of introduced cDNA(s)

J013160C22 - Rice Full-length cDNAs - Original: J013160C22

full reading [+] show sequence

GGCCTCCCTC CTGCTCAGCT ACTACTACTA GTAGCTATGC TGCCATGGAA 
TCGAGCTGCT CCGTACAGCT AATTCTTCAC CATCAACCTA CTCCATCCTC 
TCTGCTCACT CTGAATTCTC AAGGTATAGT TCTCATCAGG TAGATGGCCA 
TGGAAGCAGC AGATGAGGAG AGGGCGCCTC TGCTTCAACC TCAACCTCAA 
CCTTCACGGG GGATGCAGAT TCAGAGTATA CAGGTGATGG ATCGGTGGAC 
GTCAACAACC AGCCTGCTCT CAAGCGCAGC ACGGGGAATT GGAGAGCATG 
CTTCATGATC CTAGGTGTCG AATTCAGTGA GAATTTGGCT TACTATGGGA 
TCTCCAAGAA CCTGGTGACC TACCTCACCA AGATTCTCCA CGAGAGCAAA 
GTGAACGCCG CGAGGAATTC CTCTGCTTGG TCGGGCGCCT GCTACCTCAC 
GCCACTCTTT GGAGCTTTCT TGGCTGACAC ATATTGGGGG AAATACCGGA 
CTGTTCTTAC TTTTCTCCCG ATTTACATCC TGGGATTGCT TACTCTAATG 
GCGTCGACGT CACTCCCATC CAGCATGACG TCCTCCGACG CCGGTCACCA 
GCTTCACAGC GTCGCCGTCT ACCTCGGGCT GTACCTCGTC GCCTTCGGGA 
ACGGCGGCGT GAAGCCGTGC ACGTCGGCGT TCGGGGCGGA CCAGTTCGAC 
GGCGGTGACG CGGCGAGCTG AGGAGGAAGG GGTCCTTCTT CAACTGGTAC 
ACCTTCATGA TCAACAGCGG GTCGCTCCTG GCGTCCACGG TGCTGGTCTG 
GCTGCAGGAC AATGTGGGCT GGGGGATCAG CTTCGTGATC GTCGTCGTGG 
TCATGGCCTT CTTCCTCGCC GTCTTCTTCG CCGGCTCGAG GGTTTACAGG 
TACAGGCCGG TCAGGGTGAG CCGATGGCGG CAGTGCACAG TGACACAGGT 
GGAGGAGGTG AAGATGCTGG TGCGGATGTG CCCCATCTGG GCATGCCTGG 
TGCTCTTCTT CTCGGTGAGC AGCCAGATGT CGTCGACGCT GGTGGAGCAA 
GGCACGGCCA TGGACAACCG CGTGGGCCCC TTCACCATCC CTCCGGCCTC 
GCTCGCCACC TTCCACTCCA TCGGCGTCCT CCTCTGGATC CCCGTCTACG 
ACGTCGCGCT GGTGCCCCTG GCGCGCCGCG CCACCGGCAA GCCCAAGGGG 
ATCACGCAGC TGCAGCGCAT CGGCGTCGGC CTCGCCGTGG CCGCGCTCAT 
CATGGCCTAC TCGGCGCTGG TCGAGGAGCG GCGGCTGGCG GCGGCGCGCG 
CCGGCGCCGC CAGGACGAGC ATCCTGTGGC AGGTGCCGGC GCAGCTGATG 
CACGGCATGG CGGTGGTGTT CACCAGCATC GGCAAGTCGG AGTTCTTCTA 
CGACCAGGCG CCGCGCTCCA TGAGGAGCAT GTGCACCGCG CTCGGCCAGC 
TCGCCATCGC CGCCGGGAAC TACCTCAGCG CGTTCCTCCT CGCCGTCGTC 
GCCTCCGCCA CCACGCGCGG CGGCGACCCC GGATGGATCC CCGACGACCT 
CAACAAGGGA CACCTCGACT ACTTCTTCTG GCTCATGGCT GCTCTCTTGC 
TCCTCGACCT GCTCTTATTT GTCTTCTGCG CCATGCGATA CAAAGGGAGC 
ACTGCTGCTT CTTGATCGAC CCACCCAAAA ATGTCACTCT ATGTATGGCA 
TTTGTAGGAC TGTACAAAAA TTGAATTCGA AAATATTTTA TGATTCACTA 
ATATTACATA GATGAACCCC TTTAACTGCA CGCCAAGTGT GTAAATGCAA 
CCTCAGACAC AAAGCATATT TAATTTACAA CCTCTTGTAA CTACTAACTA 
TTGATACAAA ATAGAGCTCT TTTTTCACC

Gene models with high sequence identity

AT2G02020.2 [+] show detail - Major facilitator superfamily protein
E-value: 7e-79; Score: 146.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Oligopeptide transporter	5.9e-16
HMMPfam	Oligopeptide transporter	1.3e-29
HMMPfam	Oligopeptide transporter	3.9e-17
HMMPanther	OLIGOPEPTIDE TRANSPORTER-RELATED	1.6e-85
HMMPanther	OLIGOPEPTIDE TRANSPORTER-RELATED	1.6e-85
HMMPanther	OLIGOPEPTIDE TRANSPORTER-RELATED	3.5e-161
HMMPanther	OLIGOPEPTIDE TRANSPORTER-RELATED	3.5e-161
superfamily	Major facilitator superfamily, general substrate transporter	9.7e-16
superfamily	Major facilitator superfamily, general substrate transporter	2.5e-10

See the detailed result >

AT2G02020.2

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G62200.1).
Link: InterPro Scan - TAIR