K16309

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16309

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16309

Determination of introduced cDNA(s)

  • J023030M24 - Rice Full-length cDNAs - Original: J023030M24

    full reading [+] show sequence

    Nucleotide sequence: J023030M24 - full reading 
    GACTCTGCTA AGCTGCCCAC GGCCATGGAG TCGCCGCTGA GCCATCCGGC 
    GATGGTCGCC TTGTCGCTGC TGCTACTCGT GGCGCTCTAC CTCGCGCGCC 
    GCGCCGTGCT GGGGAAGAAA CGCAGGTATC CGCCCGTGGC CGGCACCATG 
    TTCCACCAGC TGCTCAACTT CGGCCGCTTG CTGGAGTACC ACACGGAGCT 
    CTCCCGCAAG TACCGCACCT TCCGCATGCT CACCCCGACC TGCAACTACG 
    TCTACACCGT CGAGCCGGCC AACGTCGAGC ACATCCTCAA GACCAACTTC 
    GCCAACTACG GCAAGGGCCC GATGACCCAC GACGTGCTGG AGGACCTCCT 
    CGGCGACGGG ATCTTCAACG TGGACGGCGG CATGTGGCGG CAGCAGCGCA 
    AGGTCGCCAG CCTCGAGTTC TCCACCCGTG TGCTGCGGGA CTACAGCAGC 
    GCCGTGTTCC GCGACACCGC CGCGGAGCTC GCCGGCATCC TGGAGCGTGG 
    TCCGGCGGCG AAGGGGCGGG AGAGGGTGGA CATGCAGGAT CTGCTGATGC 
    GGGCGACGCT GGACTCTTTC TTCAGGGTTG GTTTCGGGGT CAACCTTGGC 
    GTGCTCTCCG GATCCAGCAA GGAGGGCTTG GTGTTTGCCA GGGCGTTCGA 
    CGACGCGAGC GAGCAGGTGC TGTTCCGATT CTTCGACCTG CTCTGGAAGG 
    TCAAGAGGTT TCTCAACATC TCGTCGGAGG CAACCATGAA GCAGTCGATC 
    CGCACCATCA ACGACTTCGT GTACTCCATC ATCGACAGGA AGATCGAACA 
    GATGAGCAGA GAGCAACACG AATTCGCCAA GAAAGAGGAC ATACTGTCGA 
    GGTTTCTGCT CGAGAGGGAG AAGGATCCCG GCTGCTTCGA CAACAAGTAC 
    ATCAGGGACA TCATACTCAA CTTCGTCATC GCCGGCCGCG ACACGACGGC 
    GGGGACGCTG TCGTGGTTCC TCTACGCCGT CTGCAAGAAC CAGCGCGTAC 
    AGGACAAGAT CGCGAGGGAA GTGCGCGACG CCACCACCGG CGACCGCGAC 
    GTCGGCGTCC AGGATTTCTC TTCATTTCTG TCAGAAGACG CCATCAACAA 
    GATGCAGTAC CTACACGCAG CGTTGACGGA GACGCTCCGG TTGTACCCTG 
    GCGTTCCCCT CGATGTCAAA TACTGCTTCT CGGATGACAC GTTGCCGGAC 
    GGGCACGCGG TGAAGAAAGG AGACATGGTG AACTACCAAC CGTACCCCAT 
    GGGCAGGATG AAGTTCCTGT GGGGCGACGA CGCCGAGGAG TTCAAGCCGG 
    AGCGGTGGCT CGATGACAGT GGTATGTTCG TCGCCGAGAG CCCCTTCAAG 
    TTCACGGCGT TCCAGGCGGG GCCACGAATC TGCTTGGGGA AGGAGTTCGC 
    GTACAGGCAG ATGAGGATCG TTTCGGCTGT CCTTCTCTAC TTCTTCAGAT 
    TCGAGATGTG GGATGACGAC GCCACCGTGG GTTATAGGCC GATGCTGACT 
    CTGAAAATGG ATGGCCCGTT CTATCTCCGC GCATTGGCCC GGTGAAGCTT 
    CACACCATAT CAAAAGTTCA AAACTCAAGG GCGGCGCTGG TCTATTTCAT 
    CCATTTTGGC GGGGATAATG ACGGTTAGAT ATGGTTGTCG AAGACAACAG 
    TGCTCCTAAG GTGTAGGTAT GTAAGAAAAA TAACGTGTGT ATTATACTCT 
    TAAAAACTTT TT

    Gene models with high sequence identity

    1. AT2G45510.1 [+] show detail - cytochrome P450, family 704, subfamily A, polypeptide 2
      E-value: 4e-145; Score: 511.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cytochrome P450 1e-70
    FPrintScan Cytochrome P450, E-class, group I 3.5e-12
    FPrintScan Cytochrome P450, E-class, group I 3.5e-12
    FPrintScan Cytochrome P450, E-class, group I 3.5e-12
    FPrintScan Cytochrome P450, E-class, group I 3.5e-12
    FPrintScan Cytochrome P450, E-class, group I 3.5e-12
    FPrintScan Cytochrome P450, C-terminal 8.6e-11
    FPrintScan Cytochrome P450, C-terminal 8.6e-11
    FPrintScan Cytochrome P450, C-terminal 8.6e-11
    FPrintScan Cytochrome P450, C-terminal 8.6e-11
    superfamily Cytochrome P450 3.8e-100
    HMMPanther CYTOCHROME P450, SUBFAMILY 86A, B 1.4e-167
    HMMPanther Cytochrome P450 1.4e-167
    Gene3D Cytochrome P450 1.3e-90

    See the detailed result >

    AT2G45510.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 704, subfamily A, polypeptide 2
    Curator Summary
    member of CYP704A
    Computational Description
    "cytochrome P450, family 704, subfamily A, polypeptide 2" (CYP704A2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 704, subfamily A, polypeptide 1 (TAIR:AT2G44890.1); Has 29367 Blast hits to 29266 proteins in 1497 species: Archae - 44; Bacteria - 2694; Metazoa - 10887; Fungi - 6277; Plants - 8316; Viruses - 3; Other Eukaryotes - 1146 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR