K16317

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16317

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16317

Determination of introduced cDNA(s)

  • J033086H12 - Rice Full-length cDNAs - Original: J033086H12

    full reading [+] show sequence

    Nucleotide sequence: J033086H12 - full reading 
    GGCACGCAAA CTCTCGGGCG AGATCAGCGC AGGCCGTAGA GAGGGGAGGG 
    AAATGGCGAG CGCAGAGGCG AAGGACGGGG AGGAGGTCAT GGGGGAGGGA 
    CGCGAGGGTG ATCCAGTGGA CAAGATAAGG AGGTTACTCC GTATTGCTAT 
    CTACAACATT GGATATGTTG AAGGATTTTT TCCAGATGCC TACTTCAGTG 
    ACATTGTAGT TCGAGAAGAT GACATGGTGA TAAAGCAGCT TGTCCCAATC 
    GTAGATTCTG AATCAAGAAG GCTGATGAAT TTGATAGATG AAGCTGAAGC 
    ATGTTTGTGT GATGCACTGA AGAAGAAGTA TTTGAAAACA CTGGTCTTTT 
    CCATCTGTGA AAAATACGAA GGCCCGGTGC TTCAGGAATT CATTTTCTCG 
    TTTAGCTACC CCAGCACAGG TCCTGATGAA GTTGTGATGA TGATGACTCG 
    CACAGGAAGC AAAGTGATTA CAAAGTTCGA AGCAAGTGCT GTCAAAGTAA 
    CTCCTAATCA AATGAGGAGC TCTGCTTGTA AGATGATTCG GTTGATAGTT 
    CAGCAGACAA GGACATACCC GGTACAAGAG GAGCATGCTA TTGAAATGAA 
    GCTATCGTTC TACGAGGATA CAACTCCTGA AGATTATGAG CCACCTTTTC 
    CCAAGTATTG TGTTAACAGT GAGGATGTAG CCATATGGAA CAACAACATC 
    TTGAAGATGG AAGTAGGGAA TATAAACAAC AAGCACGTTG TGTTAACATT 
    GAAGGTTAAG AGTGCCCAGT CCTACTGCAA GAACAGTATA GTTGATGATT 
    GTTCTGACTA TGAGATGTGC GAATGCGAAA CATATGGTTA CACTTCAGCT 
    CCCAATGATG ATACTGAAGA AGACTATCAC ACGGGAATGC TAGCATCACC 
    AATTAAAGCA TGGTACCCAC AAGACACTGG AACTCAAATG ACGCGTAAAA 
    GGAAAACTGG ATTTGTGCTG GTATCTTCTT CAAAAAAAGA TCAAGTTCCT 
    TTTGGATTCA GGTGCCTCTC ACCATATTTG TAATGATAAA GCCATCATGC 
    GCAATTTGAA GGACGTGAAG AAGGAGTACC AAGTTTCACT TGCTTCATGT 
    GGTGGGTTAG AGCTGAAAGC GGAAATGATG GGAACTGTGG TCACAAAAGA 
    TATGAAACTC AGCCAAGTGG GCTATATACC TGAAATGGAA TTCAATGTCG 
    TATCCATTGG ACAATTGGCA GTCCAAGGTT TGATAACAAC AGGCGGGGAT 
    GGTCGGTTCA GTGTCATTGA TGCAAAGGAA GCGAGAGTGG TTGGTGAAGG 
    GCATTTACAA AGAAAAACAG AGAAAGTTGA TGGCAGAGTA TACCATGAAT 
    ATGTATTCAA ATCATTGATC CGGGAGATTG AAGGTGATGA TGAGAAGTTA 
    ATTGAACCCT TGCGGGCAGA TGATGATGAA ATCGATGAGG AAGAGGAGAA 
    GAAATGCTGG GTAATTGACA CAGGGTGCGG GAGACACATG ATTCCAGATA 
    TTAGTATACT AACCCAAGTC AAGCGTGAGG AGGTCACATT CCAAGCAGCA 
    TGTGGAATCG TGTCATCAAC CCATAAAGGA TTGGTCAAGG AGGGAAATCT 
    CATATTGAGG GATGTGTTGT GCTGCCCAAA AGTCACAAGA AAAATGATAT 
    CAGGCCCAAT GTTGGATTTA AGCGGCCATA GGTTCACTTT TAACGATAAG 
    AAATGCTGCA TAGTGCACAA GGATGGGTTG GAGCTGAGAG GGGTTGGCAA 
    ACTGGATAGG GCGACTAGAA CGTACTTGTT GAAACCCGGT GAAGACAGTA 
    GAGCAGCAGC AGCAGCAAAA GAGGAGCCAA AGATGTTGGC AGCAGCAGCA 
    GAAGGATATG GTGGACCAAA ACAAGAAGCC GACACGAAGA ATATGAGGGG 
    CAAAGGCAAG AAGACTGCCC AAGCAACTAA GAGGCTGCGA CTTAGTTAGA 
    CATGAAACCT GAGAGTCCAC CCCACACACG GGAGAATCGG ATACTTCACT 
    AGAATTGGTG TTCATCTTGA ATGTTCATTG TCAACCCAAT CTTGATTGTC 
    AACCGTTTTG GCATATTTTC AGTGCAACTG CTTACAGTAC TTTGGTAGGG 
    TTGTACTGTG TACCTGATGA GTGGACTACT TATCTGATTT CAGTCATTGA 
    TTGAGTACAT TTAAGTGTAC TGACTACTGA CAAGCTTCAT TTATCACACT 
    GATTGTTCCA ATTGTTT

    Gene models with high sequence identity

    1. AT1G67370.1 [+] show detail - DNA-binding HORMA family protein
      E-value: 1e-58; Score: 224.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam DNA-binding HORMA 2.1e-38
    ProfileScan DNA-binding HORMA 28.114
    superfamily DNA-binding HORMA 3.8e-26
    HMMPanther MEIOSIS SPECIFIC PROTEIN HOP1 1.8e-15

    See the detailed result >

    AT1G67370.1

    Model type
    Protein coding
    Short Description
    DNA-binding HORMA family protein
    Curator Summary
    meiotic asynaptic mutant 1 (ASY1). ASY1 protein is initially distributed as numerous foci throughout the chromatin. During early G2, the foci are juxtaposed to the nascent chromosome axes to form a continuous axis associated signal.
    Computational Description
    ASYNAPTIC 1 (ASY1); CONTAINS InterPro DOMAIN/s: SWIRM (InterPro:IPR007526), DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT4G32200.1); Has 527 Blast hits to 490 proteins in 159 species: Archae - 0; Bacteria - 18; Metazoa - 158; Fungi - 114; Plants - 58; Viruses - 21; Other Eukaryotes - 158 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR