K16319

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16319

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16319

Determination of introduced cDNA(s)

  • J023039L13 - Rice Full-length cDNAs - Original: J023039L13

    full reading [+] show sequence

    Nucleotide sequence: J023039L13 - full reading 
    GTCCCCCTCC GTCTCCAGAT CTCCCCCCAC CCACATTCCC CAGCACCTGT 
    CTTGCTCCGG TCCATGTAGA GCACCCCGCC TTGTCGGAAC CGCGAGCTCG 
    AGGAGAGAGA GATGGGGGCG GAGACCGGCG AGCCCAGCTC CTTCCTCAGC 
    TTATCTGCTG CCTTCTCCTA TGGAATTGCA TCTATGGCAA TGGTATTCGT 
    GAACAAAGCA ATTCTTATGC AGTATGCTCA CTCAATGACT CTTCTCACCT 
    TACAGCAAAT AGCTACAGCA CTTATCATAC ATTTTGGTCA AATTCTAGGA 
    GTGTCTAAAA GAAAAGATTT CAGTATGGCA ACAGGAAGGA AGCTTCTTCC 
    GCTGTCGATC TTCTACAATG CAAATGTTGC ATTTGCGCTG GCAAGCCTAA 
    AAGGGGTTAA CATTCCTATG TATATTGCAA TTAAAAGGCT CACTCCCCTT 
    GCTGTACTGG TGGCTGGGTG TTTACGGGGA AAGGGGAAAC CACCAACACA 
    GGTGTCCCTT TCAGTCATCT GCACGGCCGC TGGAGTCCTT ATTGCAGCTC 
    TTGGAGATTT TTCCTTTGAC TTGTATGGAT ACTCCATGGC TCTAACATCA 
    GTCTTCTTCC AGACAATGTA TTTGATTCTT GTGGAGAAAT CAGGAGCAGA 
    GGATGGTCTT TCCTCCGTTG AGTTGATGTT TTATAACAGC GTATTATCAC 
    TACCCTTTCT GTTTTTCATC ATTATAGCAA CAGGAGAATT CCCCTATTCT 
    CTTTCAGTAC TCTCTGAAAA GACGGCCTCG CTAACATTCA GTGCTATTCT 
    TCTTGTTTCG CTGGTGATGG GTATCGTCCT GAATTTCACC ATGTTTTGGT 
    GCACGATAGT GAACTCCGCT CTGACGACAA CAATAGTAGG AGTTCTCAAG 
    GGTGTTGGAT CTACTACCCT GGGTTTCGTT CTGCTGGGAG GTGTGGAAGT 
    GCATACTCTC AACGTTACTG GATTGGTGAT CAATACATTT GGAGGTGTCT 
    GGTATTCATA TGCGAAGTAT ATGCAGAAGA GGAAGATGCC AAAGAGGATT 
    GCACCTGATG TAGAGGCACA TCCTCACAAG TAACATCATT CAGTAGCTCT 
    GAAGCATAGA TATAGTAGCT ATGTAGTTAA GCTTCATTCT TTAAGCAGAT 
    AAATTATTGA AATGCCATAC CAGTTCCAAT CCAATTTTTA CCTGAACTCC 
    CATTCTAACA TCAGCAAAAT AGCTGGTGCA GTGAAGGAAG CTAATTAACT 
    TTTTTTTTTG TGAAAGACCA GTTGATCACC TGGCTGTAGT GTACTCCAAT 
    ATCAGTCCCA GTAATTCAAT AGTAGTAATA CAGGTTTCGC ATGG

    Gene models with high sequence identity

    1. AT4G31600.1 [+] show detail - UDP-N-acetylglucosamine (UAA) transporter family
      E-value: 1e-122; Score: 436.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam UAA transporter 5.4e-09
    HMMPanther SOLUTE CARRIER FAMILY 35 4.6e-60

    See the detailed result >

    AT4G31600.1

    Model type
    Protein coding
    Short Description
    UDP-N-acetylglucosamine (UAA) transporter family
    Computational Description
    UDP-N-acetylglucosamine (UAA) transporter family; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT4G32272.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR