K16324

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16324

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16324

Determination of introduced cDNA(s)

  • J013162H22 - Rice Full-length cDNAs - Original: J013162H22

    full reading [+] show sequence

    Nucleotide sequence: J013162H22 - full reading 
    TTTGTAATTG CATTCAGCAG ATGCAAAAAC TGATAAAGAA GACACCAAGA 
    TTATTAGTAA GTTCACTCGT ACATTTTTCA AAGTTCTTGG TTCTTCTCAT 
    TTGTGTGATA CTTATTACAT TTGATCTCTG TGATGTTAAA ACTGCAGTCA 
    AGGGGAAGAA ACGCAAAAGT CAGCCTGGTG GGACTGAGGA GAAAGAAAGA 
    AAATCATCTG AGAGTCTCTT CATGTCACAT TATCCTTCAA CGCTAAAAAA 
    GCAACTTGTT GATGATTGGG AGTTTGTCAC GCAGCTGGGT AAGCTTGTGA 
    AGCTACCTCG GTCCCCCACG GTCGATGATA TTCTAAAGAA GTACTTGGAG 
    CACCGGACAA AGAAGGATAA CAAGATAAAT GACTCTTACG CTGAGATTTT 
    GAAAGGATTG CGATGCTACT TTGATAAAGC ATTGCCTGCA ATGCTTTTGT 
    ATAAGAAAGA GCGACAGCAG TACTCTGAAG AGGTTAAAGG CGATGTTTCG 
    CCCTCAACTA TATATGGAGC TGAGCATCTA CTGCGCCTTT TTGTGAAATT 
    GCCGGAGCTA CTTGCGTCTG TCAACATGGA AGAAGATGCA CTCAACAAAC 
    TACAGCAGAA ATTGCTGGAC ATTCTCAAGT TTCTGCAGAA GAATCAGAGT 
    TCGTTCTTCC TTTCTGCGTA TGATGGTGGT TCTAAAGGTA CTGATGGGAT 
    AAAGACCAAA TAGAAGCAAA CTGTTGCATC TGTATGTTGA CTGTACTTAA 
    CTGTCTCGCT GAGTAATTTT AATTTTCATG TGATTGAACA ATGTGTCGAT 
    GAACATCGTA GCACTGTTTG CTAATGCTAA TTTCATGTAG TGCAGCAGAA 
    GGTTTCCT

    Gene models with high sequence identity

    1. AT4G37280.1 [+] show detail - MRG family protein
      E-value: 8e-61; Score: 23.10

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther TRANSCRIPTION FACTOR MRG\ALP13-RELATED 1.4e-60
    HMMPanther MRG 1.4e-60
    HMMPfam MRG 9.9e-51

    See the detailed result >

    AT4G37280.1

    Model type
    Protein coding
    Short Description
    MRG family protein
    Computational Description
    MRG family protein; FUNCTIONS IN: chromatin binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf3/MRG15 subunit (InterPro:IPR017398), MRG (InterPro:IPR008676), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: MRG family protein (TAIR:AT1G02740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR