K16327

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16327

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16327

Determination of introduced cDNA(s)

  • J013099B17 - Rice Full-length cDNAs - Original: J013099B17

    full reading [+] show sequence

    Nucleotide sequence: J013099B17 - full reading 
    GTAGAAGGAC ACTAAAGCAG TAGTCTAGTC TCCCGGCCAA GCAAGAACCA 
    AAAAGCAATT AAGATCGAAC TCGAGCAAAC ATGTCGTCGA CTAACAACAG 
    TTCAGGCGAG CCGCCGCCGG CGGTGCGCGT GCTGGGCGGT TGGGCGAGCC 
    CCTTCACGAA CCGCGTGGTG GTGGCGCTGA AGCTGAAGGG CGTGGAGCAC 
    GAGATGTTGC AGGAGACGGT GGGGAAGAAG AGCGAGCTGC TGCTCCGGTC 
    CAACCCGGTG CACAAGAAGT TCCCCGTGCT GCTCCACCAC AGCAAGCCCC 
    TCCCCGAGTC TCTCGTCATC GTCGAGTACA TCGACGAGGT CTGGCCGGCC 
    TCCAATGGCG GCGCCCCGGC CATTCTCCCT CGCGACCCCC ACGGCCGCGC 
    CGTCGAGCGG TTCTGGGCAC GGTACGTCGA TGACAAGATT CTACCAGGGC 
    TTCGGGTTTT GAGAGGATCG GTGGCCGGAG ACAAGGACCA AACCGCAGGT 
    GAAATGTCCA CGACTCTACA GCGTCTGGAG GAAGCATTTG TCAAGTGCAG 
    CCAAGGGAAG GAATACTTCG GCGGCGACAG CATCGGCTAC CTGGATATCG 
    CTCTGGGTTC GTTCCTCGGA TGGATCAAGG CGGTGGAGAA GATCGCCGGC 
    GTCGAGCTCC TCAACGAAAC CAAGCTTCCG ATCCTGGCTG TTTGGGCGGA 
    TCGCTTCTGC GCGCACCCAG CCGTGGTGGA CGTCGTGCCT GACGCTGATA 
    AATTGGTTGA GTTCACCGTT CAATATGGTT CTGTGCTGAA TACTGTGAAT 
    GTTCTTCCCA AGTGATGGAT GGTATGCTGC TTTGTGCCTG ACGATAAATT 
    GGTTTGAGTT CACCGTGCAA CGTGCTTCGT GTTGCCATTT AGTATGGTCA 
    CTAGTGAAAG ATGATGGTCA TTTACGTTGT TTTGTTTCGT TTCTTCGGAA 
    CTGTAGTTTC CCTTTCCGTC TGAGTCTGTA ATTTTGCTTG TAAGACTTCT 
    CTCTGAGTCT TTTATTACTA CTTCTCTCAG TCTTTTATTA CTACTACTAC 
    TACTGATGAT GATGATGATA TTCTAATGAC CATCAGCCAT TCGCC

    Gene models with high sequence identity

    1. AT1G10370.1 [+] show detail - Glutathione S-transferase family protein
      E-value: 8e-54; Score: 207.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Thioredoxin fold 7.4e-21
    Gene3D Glutathione S-transferase, C-terminal-like 5.5e-43
    ProfileScan Glutathione S-transferase, N-terminal 16.438
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 15.701
    HMMPfam Glutathione S-transferase, N-terminal 0.00000013
    HMMPfam Glutathione S-transferase, C-terminal 0.00000015
    HMMPanther GLUTATHIONE S-TRANSFERASE 4.4e-94
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 4.4e-94
    superfamily Glutathione S-transferase, C-terminal-like 1.3e-36
    superfamily Thioredoxin-like fold 7.7e-17

    See the detailed result >

    AT1G10370.1

    Model type
    Protein coding
    Short Description
    Glutathione S-transferase family protein
    Computational Description
    EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to water deprivation, response to karrikin, toxin catabolic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 18 (TAIR:AT1G10360.1); Has 6064 Blast hits to 6029 proteins in 1096 species: Archae - 0; Bacteria - 2896; Metazoa - 397; Fungi - 130; Plants - 2065; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR