K16334

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16334

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16334

Determination of introduced cDNA(s)

  • J013002J02 - Rice Full-length cDNAs - Original: J013002J02

    full reading [+] show sequence

    Nucleotide sequence: J013002J02 - full reading 
    GGCTATCCCG TCGCCACCTC GCCCCATCAC CCTCTCCCTC CACCACACTA 
    CACCCCGCTC CACTCTCAGG CAGGCAATCA GCGGCGAGGC ACCAGCCCAC 
    CGGCCGGCAA TGGCGTCCAC CTCCTGCTTC CTCCACCAGT CCACGGCCCG 
    CGTCGCCGCG CGCGTCGCCT CCCCGTCCCC GGCGACACGG ACCCACCTCC 
    TCGTCTGCCG CGCCCAGAAG CAGGACGACG CCGACGTCTC CCGCCGCGCG 
    GCGCTCGCGC TGCTGGCCGG AGCGACGGCG GCGGTGGGGG TGAAGGTGGC 
    GCCCGCCGCC GCGGCCTACG GCGAGGCGGC GAACGTGTTC GGGAAGCCCA 
    AGACGAACAC GGAGTTCATC GCCTACAGCG GCGAGGGGTT CAAGCTGCTG 
    ATCCCGTCCA AGTGGAACCC CAGCAAGGAG CGCGAGTTCC CCGGACAGGT 
    CCTCCGCTAC GAGGACAACT TCGACGCCAA CAGCAACGTC TCCGTCATAA 
    TCAACCCCAC CACCAAGAAG ACCATCACCG AGTTCGGCTC CCCCGAGGAG 
    TTCCTCGCCC AGGTCGACTT CTTGCTTGGC AAGCAGGCCT ACTCCGGCAA 
    GACAGATTCC GAGGGTGGGT TTGAGTCGGA CGCGGTGGCG ACGGCGAACA 
    TCCTGGAGAG CTCGGCGCCG GTGGTGGGAG GGAAGCAGTA CTACAGCGTA 
    ACGGTGCTGA CGAGGACGGC GGACGGCGAC GAGGGCGGCA AGCACCAGCT 
    GATCACGGCC ACCGTCAACG ACGGCAAGCT GTACATCTGC AAGGCGCAGG 
    CCGGCGACAA GAGGTGGTTC AAGGGCGCCA GGAAGTTCGT CGAGAGCGCA 
    GCCAGCTCCT TCAGCGTCGC ATGATCGTCG AAATCTCTAT CTCAGCTTCT 
    CTTTAATCCC TAGCGAATCA AAATCAAATC AATCGAGTTC GTTGCTCAGA 
    GAGATGCAGT GCACGCATGT GTGTGTGCGT GTGTGTTTCT TTGATTGTAC 
    ATGAGAATTA AGAACAAGTT AAGGAGAGAG GTCGATCCAT CGATTTCCCC 
    TGCATGCAAG GATTGATTTT CTGTGATCCG TGTGTTAAGT AATCCTAGTA 
    ATTAATCATG TTCC

    Gene models with high sequence identity

    1. AT1G06680.1 [+] show detail - photosystem II subunit P-1
      E-value: 2e-81; Score: 300.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 2.6e-69
    HMMPfam Photosystem II oxygen evolving complex protein PsbP 1.6e-54
    superfamily Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich 1.6e-57

    See the detailed result >

    AT1G06680.1

    Model type
    Protein coding
    Short Description
    photosystem II subunit P-1
    Curator Summary
    Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.
    Computational Description
    photosystem II subunit P-1 (PSBP-1); FUNCTIONS IN: poly(U) RNA binding; INVOLVED IN: photosynthesis, light reaction, defense response to bacterium, response to light intensity; LOCATED IN: in 12 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123), Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); BEST Arabidopsis thaliana protein match is: photosystem II subunit P-2 (TAIR:AT2G30790.1); Has 287 Blast hits to 286 proteins in 81 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR