K16343

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16343

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16343

Determination of introduced cDNA(s)

  • J013070D13 - Rice Full-length cDNAs - Original: J013070D13

    full reading [+] show sequence

    Nucleotide sequence: J013070D13 - full reading
    GGAAGGCCCA AAGCCCACAA CAGAGAGGAG AGTGGGCGAC GGGGGGCTAG 
    GGCGGCGGCG GCGCGGCGAC CAGCGACGGG CGGCGCGCAC CTGACCGGAA
    TGGCCCACCT CGCGGCCTCT GCCGCCCCGC TTCCAAGCGC TGACCCCGAC
    GCCGGCGAGG AGTCCTCCCA CTCTCCGCCG CCGCCGGAGA AGGGGCTGAG
    GAAGGTGGTG GTGGTGATGG GCGCGACTGG CGCCGGCAAG TCGCGGCTGG
    CCGTCGACCT CGCGAGCCAC TTCGCCGGCG TCGAGGTGGT CAGCGCCGAC
    TCCATGCAAG TCTACGGTGG GCTCGATGTC CTCACCAACA AGGTCCCCCT
    CCACGAGCAG AAAGGCGTTC CTCACCATCT CCTGAGCGTG ATTGATCCCT
    CTGTGGAGTT CACTTGCCGC GATTTCCGCG ACCATGCTGT GCCGATTATA
    GAAGGTATAT TGGATCGTGG CGGCCTCCCT GTTATTGTTG GTGGTACAAA
    CTTCTACATC CAGGCTCTTG TTAGCCCATT CCTCTTTGAT GATATGGCAC
    AGGATATTGA GGGTCTTACT TTAAATGACC ACCTAGATGA GATAGGGCTT
    GATAATGATG ATGAAGCCGG TCTGTATGAA CATTTGAAGA AGATTGATCC
    TGTTGCTGCA CAAAGGATAC ACCCGAACAA CCATCGAAAA ATAAAACGCT
    ACCTTGAGTT GTATGAATCC ACAGGTGCCC TACCTAGTGA TCTTTTCCAA
    GGGCAAGCCA CAGAGAAGTG GGGTCGACCT AGTAACTCCA GATTTGACTG
    TTGTTTCTTG TGGTTAGATG CTGATCTTCA TGTTCTGGAT CGTTATGTCA
    ATGAAAGGGT CGACTGCATG ATTGATGATG GCCTGCTAGA TGAAGTGTGT
    AACATATATG ATCGAGAGGC CACTTATACC CAAGGGCTGC GGCAGGCCAT
    TGGTGTTCAT GAATTTGATG AGTTTTTCAG ATTTTATTTT GCAAGGAAGG
    AAACCGGTGA GATAAAGATG GATTCCTGTA CAACTATGGC AGGTCTCCAT
    GATGATAACC TGAAGGGCTT ATTGGATGAA GCAGTCTCAC AACTAAAAGC
    AAACACTCGC AGACTTGTTC GACGTCAAAG ACGAAGGCTG CATCGGTTGA
    ATAAATATTT TGAGTGGAAC TTGCGTCATA TTGATGCAAC AGAAGCTTTC
    TATGGTGCCA CTGCTGACTC ATGGAACATG AAAGTTGTGA AACCTTGCGT
    GGATATTGTT AGAGATTTCT TGTCTGATGA TACAATTTTG GCAAGCAGAG
    ATGGTTCTAG TGTAACTGGA AGCCCTAGGA TGTCTTCAAG AGAGTTGTGG
    ACTCAATATG TTTGTGAGGC CTGTGATAAC CGGGTACTTC GGGGAACGCA
    TGAGTGGGAG CAACACAAGC AAGGCCGATG CCACCGTAAA AGAGTACAAC
    GTTTGAAACA GAAGGCTAGT ACAGTGATAT CATTATAGGC AATTAGCACT
    GTTTGCACTC TCGGTGTTCA TGAACCTTTC TTCATTCTCT GCAACTGTCC
    CCATGCATCC TGTTTGTCAA ATTGGCTGAA GACTACACCA TTCAGAAGGT
    AGCAAGCAGC AGATATATTT GTTAATAGTA CCTTGCTAGA TTCTTGTGCC
    AGTTCCAAAC ATCCAATGCA GAGAATACAA ACTCTACAGA TTGGTCAGC

    Gene models with high sequence identity

    1. AT2G27760.1 [+] show detail - tRNAisopentenyltransferase 2
      E-value: 2e-116; Score: 416.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam tRNA isopentenyltransferase 1e-50
    HMMPfam zf-C2H2_jaz 3.2e-05
    superfamily P-loop containing nucleoside triphosphate hyd 7e-13
    HMMPanther TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSF 1.2e-101
    HMMPanther tRNA isopentenyltransferase 1.2e-101
    HMMTigr tRNA delta(2)-isopentenylpyrophosphate transferase 2.7e-51

    See the detailed result >

    AT2G27760.1

    Model type
    Protein coding
    Short Description
    tRNAisopentenyltransferase 2
    Curator Summary
    Encodes tRNA isopentenyltransferase, similar to yeast MOD5.
    Computational Description
    tRNAisopentenyltransferase 2 (IPT2); CONTAINS InterPro DOMAIN/s: tRNA delta(2)-isopentenylpyrophosphate transferase (InterPro:IPR018022), tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 5 (TAIR:AT5G19040.1); Has 8447 Blast hits to 8274 proteins in 2665 species: Archae - 0; Bacteria - 5426; Metazoa - 146; Fungi - 137; Plants - 431; Viruses - 0; Other Eukaryotes - 2307 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR