K16343

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16343

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16343

Determination of introduced cDNA(s)

  • J013070D13 - Rice Full-length cDNAs - Original: J013070D13

    full reading [+] show sequence

    Nucleotide sequence: J013070D13 - full reading 
    GGAAGGCCCA AAGCCCACAA CAGAGAGGAG AGTGGGCGAC GGGGGGCTAG 
    GGCGGCGGCG GCGCGGCGAC CAGCGACGGG CGGCGCGCAC CTGACCGGAA 
    TGGCCCACCT CGCGGCCTCT GCCGCCCCGC TTCCAAGCGC TGACCCCGAC 
    GCCGGCGAGG AGTCCTCCCA CTCTCCGCCG CCGCCGGAGA AGGGGCTGAG 
    GAAGGTGGTG GTGGTGATGG GCGCGACTGG CGCCGGCAAG TCGCGGCTGG 
    CCGTCGACCT CGCGAGCCAC TTCGCCGGCG TCGAGGTGGT CAGCGCCGAC 
    TCCATGCAAG TCTACGGTGG GCTCGATGTC CTCACCAACA AGGTCCCCCT 
    CCACGAGCAG AAAGGCGTTC CTCACCATCT CCTGAGCGTG ATTGATCCCT 
    CTGTGGAGTT CACTTGCCGC GATTTCCGCG ACCATGCTGT GCCGATTATA 
    GAAGGTATAT TGGATCGTGG CGGCCTCCCT GTTATTGTTG GTGGTACAAA 
    CTTCTACATC CAGGCTCTTG TTAGCCCATT CCTCTTTGAT GATATGGCAC 
    AGGATATTGA GGGTCTTACT TTAAATGACC ACCTAGATGA GATAGGGCTT 
    GATAATGATG ATGAAGCCGG TCTGTATGAA CATTTGAAGA AGATTGATCC 
    TGTTGCTGCA CAAAGGATAC ACCCGAACAA CCATCGAAAA ATAAAACGCT 
    ACCTTGAGTT GTATGAATCC ACAGGTGCCC TACCTAGTGA TCTTTTCCAA 
    GGGCAAGCCA CAGAGAAGTG GGGTCGACCT AGTAACTCCA GATTTGACTG 
    TTGTTTCTTG TGGTTAGATG CTGATCTTCA TGTTCTGGAT CGTTATGTCA 
    ATGAAAGGGT CGACTGCATG ATTGATGATG GCCTGCTAGA TGAAGTGTGT 
    AACATATATG ATCGAGAGGC CACTTATACC CAAGGGCTGC GGCAGGCCAT 
    TGGTGTTCAT GAATTTGATG AGTTTTTCAG ATTTTATTTT GCAAGGAAGG 
    AAACCGGTGA GATAAAGATG GATTCCTGTA CAACTATGGC AGGTCTCCAT 
    GATGATAACC TGAAGGGCTT ATTGGATGAA GCAGTCTCAC AACTAAAAGC 
    AAACACTCGC AGACTTGTTC GACGTCAAAG ACGAAGGCTG CATCGGTTGA 
    ATAAATATTT TGAGTGGAAC TTGCGTCATA TTGATGCAAC AGAAGCTTTC 
    TATGGTGCCA CTGCTGACTC ATGGAACATG AAAGTTGTGA AACCTTGCGT 
    GGATATTGTT AGAGATTTCT TGTCTGATGA TACAATTTTG GCAAGCAGAG 
    ATGGTTCTAG TGTAACTGGA AGCCCTAGGA TGTCTTCAAG AGAGTTGTGG 
    ACTCAATATG TTTGTGAGGC CTGTGATAAC CGGGTACTTC GGGGAACGCA 
    TGAGTGGGAG CAACACAAGC AAGGCCGATG CCACCGTAAA AGAGTACAAC 
    GTTTGAAACA GAAGGCTAGT ACAGTGATAT CATTATAGGC AATTAGCACT 
    GTTTGCACTC TCGGTGTTCA TGAACCTTTC TTCATTCTCT GCAACTGTCC 
    CCATGCATCC TGTTTGTCAA ATTGGCTGAA GACTACACCA TTCAGAAGGT 
    AGCAAGCAGC AGATATATTT GTTAATAGTA CCTTGCTAGA TTCTTGTGCC 
    AGTTCCAAAC ATCCAATGCA GAGAATACAA ACTCTACAGA TTGGTCAGC

    Gene models with high sequence identity

    1. AT2G27760.1 [+] show detail - tRNAisopentenyltransferase 2
      E-value: 2e-116; Score: 416.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam tRNA isopentenyltransferase 1e-50
    HMMPfam zf-C2H2_jaz 3.2e-05
    superfamily P-loop containing nucleoside triphosphate hyd 7e-13
    HMMPanther TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSF 1.2e-101
    HMMPanther tRNA isopentenyltransferase 1.2e-101
    HMMTigr tRNA delta(2)-isopentenylpyrophosphate transferase 2.7e-51

    See the detailed result >

    AT2G27760.1

    Model type
    Protein coding
    Short Description
    tRNAisopentenyltransferase 2
    Curator Summary
    Encodes tRNA isopentenyltransferase, similar to yeast MOD5.
    Computational Description
    tRNAisopentenyltransferase 2 (IPT2); CONTAINS InterPro DOMAIN/s: tRNA delta(2)-isopentenylpyrophosphate transferase (InterPro:IPR018022), tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 5 (TAIR:AT5G19040.1); Has 8447 Blast hits to 8274 proteins in 2665 species: Archae - 0; Bacteria - 5426; Metazoa - 146; Fungi - 137; Plants - 431; Viruses - 0; Other Eukaryotes - 2307 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR