K16402

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16402

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16402

Determination of introduced cDNA(s)

  • J033069D24 - Rice Full-length cDNAs - Original: J033069D24

    full reading [+] show sequence

    Nucleotide sequence: J033069D24 - full reading 
    CTGCTGGTTC TGTTTGGATA ATCTTGCAGC TTGTTGGACG GCTTTCCGAG 
    GAGGAATTGA TGAATCAGTT GCCCACATTT TTGCCAGCAC TGTTTGATGC 
    TTTTAGTAAC CAAAGCCCTG ATGTTCGAAA GACTGTTGTA TTCTGCTTGG 
    TGGATATCTA CATCATGCTT GGGAAGGCAT TCGTCCCGTA TTTGGAAGGG 
    CTTAACAGCA CGCAGCTGCG CCTTGTAACT ATCTACGCAA ACCGGATTTC 
    ACAAGCAAGG TCTGGCGCTC CGATTGATGC TAACCAATGA CCTGAGGTGC 
    AACACAACGC CCTGTTATTA TTTGTGTTCT GTATGAATAC CTGTTTGGCA 
    GGGGTGCATT TTTGGGTTTC ATTTGTTTGT GCATGTGTAT AGTATAAACA 
    AAGCCCCTTG TGTATCGAGC TCCTGCCCTT CTTTTTCTCT TTGTGTGATT 
    ATGTATTCCT TTTTTTTTTC AACCTCTTCT TTTTGTCAGC ATGGTGAGTG 
    TTAATGAGTG TTTTCCTTTT GTACCACTTA GTGCTTACAC TGTACAAAGA 
    AAAAGGATAG TGTAGGTTCA TGGAGAGACC TAGTGTCTGC CCCATTTTCA 
    TTTGCTGTAT GATTTCCGTT GGAATTGCTA GGTGTGAATT CTC

    Gene models with high sequence identity

    1. AT2G20190.1 [+] show detail - CLIP-associated protein
      E-value: 7e-36; Score: 147.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther gb def: Hypothetical protein At2g20190 3.1e-62
    HMMPanther CLASP 3.1e-62

    See the detailed result >

    AT2G20190.1

    Model type
    Protein coding
    Short Description
    CLIP-associated protein
    Curator Summary
    Encodes a microtubule-associated protein that is involved in both cell division and cell expansion. It likely promotes microtubule stability.
    Computational Description
    CLIP-associated protein (CLASP); FUNCTIONS IN: binding; INVOLVED IN: mitosis, protein stabilization, cell growth; LOCATED IN: spindle microtubule, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR