K16403

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16403

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16403

Determination of introduced cDNA(s)

  • J033081A01 - Rice Full-length cDNAs - Original: J033081A01

    full reading [+] show sequence

    Nucleotide sequence: J033081A01 - full reading 
    GGAGGTGAGA GACAGCGCGC GCCACCGCCG CCGCCGCCGC TATTTTCGTG 
    TTTTTTGATT TCACGGTGCG CGCGGTGGCC GGCCGGAGAT GCAGGCGGTG 
    GCGGCGGCGG CGGGGATGAT GCGGCGGGGG AGCCTGACGA TAGACCCGGC 
    GGGGGAGGAG GAGGCGCCGG CCGAGAGGGT GGGGCGGCTG GTGCGGGAGA 
    GCCCCGTGGT GGTGTTCGCG CGGCGGGGGT GCTACATGGC GCACGTCATG 
    AGGCGCCTCC TCGCCGCCGT CGGCGCGCAC GCCACCGTCA TCGAGCTGGA 
    GGGCGGCGCG GCGGAGGAGG AGGAGGCGGC GCTGGGCGGC GGCGCCGCGC 
    TCCCCGCGCT CTTCGTCGGC GGCGACCCCG TCGGCGGCCT CGAGGGCCTC 
    ATGGGCCTCC ACCTCAGCGG CCGCCTCGTC CCGCGCCTCA GAGAGGTCGG 
    CGCCCTCTGC ACCTAGCCCG CGGGGCCGCC ACGTGTCCCA TCGTCGTCTT 
    CCTCCGTCCT ATCCTCTCTA CCATGGCTTA GCTCCATGCC TTCCATGTAC 
    ATAAGCTGGG TTATCTCCGC CATTTCAGAA ATCTAGAGGG GGTGGGGTGA 
    AAAATTCCAC GCCGAAATAA TACTAAATTT TGTTTGGGCT CATGTGTTCT 
    TCTGGAAATC AAAGGGGTTT GTG

    Gene models with high sequence identity

    1. AT5G11930.1 [+] show detail - Thioredoxin superfamily protein
      E-value: 2e-18; Score: 89.40

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thioredoxin-like fold 1.6e-16
    Gene3D Thioredoxin fold 5.1e-15
    ProfileScan Glutaredoxin 17.565
    HMMTigr Glutaredoxin-like, plant II 2.6e-34
    Coil coiled-coil 0
    HMMPanther GLUTAREDOXIN, GRX 9.3e-41
    HMMPanther GLUTAREDOXIN 9.3e-41

    See the detailed result >

    AT5G11930.1

    Model type
    Protein coding
    Short Description
    Thioredoxin superfamily protein
    Computational Description
    Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G33040.1); Has 825 Blast hits to 825 proteins in 90 species: Archae - 0; Bacteria - 22; Metazoa - 106; Fungi - 2; Plants - 671; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR