K16409

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16409

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
whole plant flowering stage (PO:0007016)
  • premature (PATO:0000694)
    (Adult plant::Flowering::early)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16409

Determination of introduced cDNA(s)

  • J023042C15 - Rice Full-length cDNAs - Original: J023042C15

    full reading [+] show sequence

    Nucleotide sequence: J023042C15 - full reading
    GACGCACACA CTAGTGCAAG CAGCTCGAGC TTGAGCTCCA CCTCGCCATC 
    GCCGGCGACT TCTCCTGTCC TGACCGGCCG GAGCTCCGAT CTTGGCGGTG
    ACCAAGAGAC CTGACGAGAC GATGTCCGCC GCCGCCGCCG CCGCCGCATC
    CTCCCCCGCT CCCCGGTTGG AAAGCAAGGT TGCGCTGGTT ACCGGTGGTG
    CTTCAGGTAT TGGTGAAGCA ATTGTTCGCC TCTTTAGAGA GCATGGTGCA
    AAGGTATGTA TTGCAGATAT CCAAGATGAA GCAGGTCAGA AGCTCCGGGA
    CTCCCTTGGA GGTGACCAAG ATGTCTTATT TGTCCACTGC GATGTTTCGG
    TGGAAGAGGA TGTAGCCCGA GCGGTCGATG CAACAGCTGA AAAGTTTGGT
    ACTCTTGACA TCATGGTCAA CAATGCTGGC TTTACAGGCC AGAAAATCAC
    AGATATCCGA AACATCGACT TTTCTGAAGT CAGGAAGGTA ATCGACATCA
    ATTTAGTTGG TGTATTCCAC GGGATGAAAC ACGCAGCGCG CATCATGATC
    CCCAATAAGA AGGGGTCCAT CATCTCATTG GGAAGTGTTT CTAGTGTCAT
    TGGAGGGTTG GGACCTCATT CATACACAGC AACCAAGCAT GCTGTGGTGG
    GTCTAACCAA GAATGTAGCT GGGGAATTGG GGAAGCATGG GATACGCGTG
    AACTGCGTAT CTCCCTATGC AGTGCCCACG GCTCTCTCCA TGCCGTATCT
    GCCCCAGGGC GAGCGCAAGG ATGATGCCCT GAAAGACTTT TTCGCCTTTG
    TTGGTGGTGA AGCAAACCTG AAAGGTGTGG ATCTGCTACC TAAGGATGTT
    GCTCAAGCAG TGCTCTACTT GGCAAGCGAT GAAGCGAGGT ACATCAGCGC
    GCTCAACCTC ATGGTGGATG GTGGCTTTAC CTCTGTGAAT CACAATTTGA
    GAGCATTTGA AGATTAACAG AAGTTGTTAG GCACAATTGG TACTCTAGTT
    TCAGATGCTA TGTACCATTC TGATTTTAGA ACTTTGATCA ATTACCTAAA
    GTAAGAATGT CAATAAGGAA TGCAATCTTG TATCTGTGGT ATTGTATAGT
    ACTATGATTG TATTGCCGGT GCTTAAGGAC AATCATTGAT TATTATCAGC
    ACTATTATGT TACAGTTCC

    Gene models with high sequence identity

    1. AT1G52340.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 1e-77; Score: 286.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 1.9e-71
    HMMPfam Short-chain dehydrogenase/reductase SDR 8.1e-29
    HMMPanther SHORT CHAIN ALCOHOL DEHYDROGENASE 9.3e-129
    HMMPanther Short-chain dehydrogenase/reductase SDR 9.3e-129
    FPrintScan Glucose/ribitol dehydrogenase 2e-37
    FPrintScan Glucose/ribitol dehydrogenase 2e-37
    FPrintScan Glucose/ribitol dehydrogenase 2e-37
    FPrintScan Glucose/ribitol dehydrogenase 2e-37
    FPrintScan Glucose/ribitol dehydrogenase 2e-37
    FPrintScan Glucose/ribitol dehydrogenase 2e-37
    FPrintScan Short-chain dehydrogenase/reductase SDR 2.9e-11
    FPrintScan Short-chain dehydrogenase/reductase SDR 2.9e-11
    FPrintScan Short-chain dehydrogenase/reductase SDR 2.9e-11
    Gene3D NAD(P)-binding domain 1e-66

    See the detailed result >

    AT1G52340.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Curator Summary
    Encodes a cytosolic short-chain dehydrogenase/reductase involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis. Mutants are insensitive to sucrose and glucose.
    Computational Description
    ABA DEFICIENT 2 (ABA2); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G51680.1); Has 120353 Blast hits to 120130 proteins in 3578 species: Archae - 983; Bacteria - 78428; Metazoa - 5777; Fungi - 6239; Plants - 2770; Viruses - 5; Other Eukaryotes - 26151 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR