K16409

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	whole plant flowering stage (PO:0007016)	premature (PATO:0000694) (Adult plant::Flowering::early)
	stem (PO:0009047)	desaturated green (PATO:0001272) (Stem::Color::pale) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16409

Determination of introduced cDNA(s)

J023042C15 - Rice Full-length cDNAs - Original: J023042C15

full reading [+] show sequence

GACGCACACA CTAGTGCAAG CAGCTCGAGC TTGAGCTCCA CCTCGCCATC 
GCCGGCGACT TCTCCTGTCC TGACCGGCCG GAGCTCCGAT CTTGGCGGTG 
ACCAAGAGAC CTGACGAGAC GATGTCCGCC GCCGCCGCCG CCGCCGCATC 
CTCCCCCGCT CCCCGGTTGG AAAGCAAGGT TGCGCTGGTT ACCGGTGGTG 
CTTCAGGTAT TGGTGAAGCA ATTGTTCGCC TCTTTAGAGA GCATGGTGCA 
AAGGTATGTA TTGCAGATAT CCAAGATGAA GCAGGTCAGA AGCTCCGGGA 
CTCCCTTGGA GGTGACCAAG ATGTCTTATT TGTCCACTGC GATGTTTCGG 
TGGAAGAGGA TGTAGCCCGA GCGGTCGATG CAACAGCTGA AAAGTTTGGT 
ACTCTTGACA TCATGGTCAA CAATGCTGGC TTTACAGGCC AGAAAATCAC 
AGATATCCGA AACATCGACT TTTCTGAAGT CAGGAAGGTA ATCGACATCA 
ATTTAGTTGG TGTATTCCAC GGGATGAAAC ACGCAGCGCG CATCATGATC 
CCCAATAAGA AGGGGTCCAT CATCTCATTG GGAAGTGTTT CTAGTGTCAT 
TGGAGGGTTG GGACCTCATT CATACACAGC AACCAAGCAT GCTGTGGTGG 
GTCTAACCAA GAATGTAGCT GGGGAATTGG GGAAGCATGG GATACGCGTG 
AACTGCGTAT CTCCCTATGC AGTGCCCACG GCTCTCTCCA TGCCGTATCT 
GCCCCAGGGC GAGCGCAAGG ATGATGCCCT GAAAGACTTT TTCGCCTTTG 
TTGGTGGTGA AGCAAACCTG AAAGGTGTGG ATCTGCTACC TAAGGATGTT 
GCTCAAGCAG TGCTCTACTT GGCAAGCGAT GAAGCGAGGT ACATCAGCGC 
GCTCAACCTC ATGGTGGATG GTGGCTTTAC CTCTGTGAAT CACAATTTGA 
GAGCATTTGA AGATTAACAG AAGTTGTTAG GCACAATTGG TACTCTAGTT 
TCAGATGCTA TGTACCATTC TGATTTTAGA ACTTTGATCA ATTACCTAAA 
GTAAGAATGT CAATAAGGAA TGCAATCTTG TATCTGTGGT ATTGTATAGT 
ACTATGATTG TATTGCCGGT GCTTAAGGAC AATCATTGAT TATTATCAGC 
ACTATTATGT TACAGTTCC

Gene models with high sequence identity

AT1G52340.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 1e-77; Score: 286.00

InterPro Scan Digest

Program	Description	E-value
superfamily	NAD(P)-binding domain	1.9e-71
HMMPfam	Short-chain dehydrogenase/reductase SDR	8.1e-29
HMMPanther	SHORT CHAIN ALCOHOL DEHYDROGENASE	9.3e-129
HMMPanther	Short-chain dehydrogenase/reductase SDR	9.3e-129
FPrintScan	Glucose/ribitol dehydrogenase	2e-37
FPrintScan	Glucose/ribitol dehydrogenase	2e-37
FPrintScan	Glucose/ribitol dehydrogenase	2e-37
FPrintScan	Glucose/ribitol dehydrogenase	2e-37
FPrintScan	Glucose/ribitol dehydrogenase	2e-37
FPrintScan	Glucose/ribitol dehydrogenase	2e-37
FPrintScan	Short-chain dehydrogenase/reductase SDR	2.9e-11
FPrintScan	Short-chain dehydrogenase/reductase SDR	2.9e-11
FPrintScan	Short-chain dehydrogenase/reductase SDR	2.9e-11
Gene3D	NAD(P)-binding domain	1e-66

See the detailed result >

AT1G52340.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary: Encodes a cytosolic short-chain dehydrogenase/reductase involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis. Mutants are insensitive to sucrose and glucose.
Computational Description: ABA DEFICIENT 2 (ABA2); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G51680.1); Has 120353 Blast hits to 120130 proteins in 3578 species: Archae - 983; Bacteria - 78428; Metazoa - 5777; Fungi - 6239; Plants - 2770; Viruses - 5; Other Eukaryotes - 26151 (source: NCBI BLink).
Link: InterPro Scan - TAIR