K16411

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16411

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16411

Determination of introduced cDNA(s)

J023023N20 - Rice Full-length cDNAs - Original: J023023N20

full reading [+] show sequence

GGTCAGACAG CACAAAACAT CGATCCAAAA GCACTTCTCG GACAGCAAAT 
CGTCTCGATC CTGTTATTAG TATTCAGGCG CCATGGCAGC TGGAAGCTCC 
CATGTTTCTG CTGATGCAAG GAAGCTGGTG GGCAAGGTGG CGGTGATCAC 
CGGCGGCGCG AGCGGCATCG GCGCGTGCAC GGCGCGGCTG TTCGTGAAGC 
ACGGCGCCCG CGTCGTGGTC GCCGACATCC AGGACGAGCT GGGAGCTAGC 
CTCGTCGCCG AGCTCGGCCC GGACGCGTCC AGCTACGTGC ACTGCGACGT 
CACGAACGAG GGCGACGTCG CCGCCGCGGT CGACCACGCC GTCGCCAGGT 
TCGGGAAGCT CGACGTCATG TTCAACAACG CCGGCGTCAG TGGCCCGCCG 
TGCTTCAGGA TGAGCGAGTG CACCAAGGAG GACTTCGAGC GCGTGCTCGC 
CGTGAACCTG GTCGGCCCGT TCCTGGGCAC CAAGCACGCG GCGCGGGTGA 
TGGCGTCGGC GCGCCGCGGC AGCATCATCT CGACGGCGAG CCTGTCGTCG 
TCGGTGTCCG GCGCGGCGTC GCACGCGTAC ACGACGTCGA AGCACGCGCT 
GGTGGGGTTC ACGGAGAACG CGGCCGGCGA GCTGGGCCGG CACGGGATCC 
GCGTCAACTG CGTTTCGCCC GCCGGGGTCG CCACGCCGCT GGCGAGGGCT 
GCCATGGGCA TGGACGACGA GGCAATCGAG GCGATCATGG CGAACTCGGC 
GAACCTGAAG GGCGCAGGCG CACTCAAGGC GGACGACATC GCCGCCGCGG 
CGCTGTTCCT CGCCAGCGAC GACGGCCGGT ACGTGAGCGG CCAGAACCTG 
CGCGTCGACG GCGGCTTGTC CGTCGTCAAC AGCAGCTTTG GTTTCTTCAG 
GGACTGAAAA TGATTTGGGA CCAGTCGTCA GTCGATCGAC AATACTACAT 
TACGTCGTTA TATATGGTTG ATGTTATTTG TGTTGCATTC TTGAATAAAC 
TAGCATCCAT GGTTCCCCGC TTGTTTGCGA GGACATTCCA TCGCTAGCTA 
GATTCTGTCT TGTATTTGTA TTTGTTGGAA GAGTGAAATA CATGCATGAA 
CGGTGCTTAA ACTATTCAGG TTTCCTGAAC TCC

Gene models with high sequence identity

AT2G47140.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 3e-47; Score: 186.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SHORT CHAIN ALCOHOL DEHYDROGENASE	1.3e-116
HMMPanther	Short-chain dehydrogenase/reductase SDR	1.3e-116
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-35
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-35
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-35
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-35
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-35
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-35
FPrintScan	Short-chain dehydrogenase/reductase SDR	1.1e-09
FPrintScan	Short-chain dehydrogenase/reductase SDR	1.1e-09
FPrintScan	Short-chain dehydrogenase/reductase SDR	1.1e-09
superfamily	NAD(P)-binding domain	4.6e-71
PatternScan	Short-chain dehydrogenase/reductase, conserved site	0
Gene3D	NAD(P)-binding domain	2.4e-67
HMMPfam	Short-chain dehydrogenase/reductase SDR	1.6e-30

See the detailed result >

AT2G47140.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G47130.1); Has 112960 Blast hits to 112749 proteins in 3532 species: Archae - 956; Bacteria - 74077; Metazoa - 4904; Fungi - 6164; Plants - 2566; Viruses - 5; Other Eukaryotes - 24288 (source: NCBI BLink).
Link: InterPro Scan - TAIR