K16425

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16425

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16425

Determination of introduced cDNA(s)

  • J023015A14 - Rice Full-length cDNAs - Original: J023015A14

    full reading [+] show sequence

    Nucleotide sequence: J023015A14 - full reading 
    GTTTATTCTT TTGTATTTAA AACTTATTTT GACCATATGT TTGGTTATAG 
    TTATGACCAC TAGATTGTTA AGAGCAATAT TTATTTTAGC AGCTTCATGT 
    AATGTAAAAA AATATTTGGA TGACAGTTAT CGTAGAAGTA AGCAATAGAA 
    TTAACCATTT TTGTCGGCTA CATTGCTTTT CCTTTCATTT TGGTACTACA 
    ACATGAGCTA GGGCCTAGGA GATGGTGCAT ATGGATGTTG AATCAAACTC 
    TTTGAATGTA ATGCTGGTAT GATTGTTCAC CCAGAAATTT GAACTTTGGG 
    CTTACAAGAA ACAGTTATTG TCTTTTTGTA TTTGTGATTT TGTAGAGACC 
    AGAAATTTCC CAAGATAGTG ATATTTTACT GAGTAGCCCA GCATGTTTGC 
    GCGTTGTAAC TCTTATTGGG CTAATTCTTT CTTATATCAT ACTTGTTGTC 
    AAAGTTTTGA CTAGGGTCGT ATTATTTTGT GAGACTGTTT CTTATGTAGG 
    TCATTGGTGC AGTTGGTTTC ATGAACCACA GGTTGGAGAT TCCTAGTGAA 
    ACAGATCCTC AGTGGACATC ACTTATCCTG AGTTGTTGGG AAACTGACTC 
    ACAACTCCGT CCATCGTTCC AACAACTTCT GGAGAGACTT CGAGAGCTGC 
    AAAGGCAGTA CAATGTCCAG ACTCAGATGC AGCGAAATGC ATCCGCTGCT 
    GCAAAAAATA GCAGCATTGA GGAATGAATG GAGATCCCTT ATGAGGCGAA 
    CGATCAATTG ACACAATTTT GCAGGCGGTG CAGCGACACG CTAGCCTGAT 
    CAGGATTCGC ACCTCCCGCG TGGTTACTGC TGATGATGCT GATTGATACA 
    GCCATTGCTG AAGATTGAGC AAGACGAGGG AGCTGCCTCC TGAATCCTCT 
    TGGCCTGAAG TTCCACCTGC AGCTTCGGAA TTCTGACCAA GGTAGAGAGT 
    ACTGGAGCTG AGGCTGGCAC TTTTGGTGAA TTCTTCCATG ACAACTCCAA 
    TTTATGCCTA GTCGAATGTC GACCAAGCTC GACTCTGTAA CGCGAAGGCG 
    ACAATGATCT TGTGTAGATT GTTCTGACGA TCGACAACCA AATTGTATTC 
    GAGTTGCTGA TCCTGATTAT GCATGAAAGT TGCACCATCA ACATTGTAAG 
    GTTCAACCTG TTCTTTTGTT CTGCTCTGAT TCCTTCTCTG TTACTGTAAC 
    CATGTTGTTT AGAATCCCAT CAGAACCCAA TCATTCTTGC TACTTCGACC 
    ATGGATGGAA GAAATATGGA ATTGTGCCTT CAATTTCACA TTATTCAAAC 
    TTTGGCTGCA AATAATTTAA ATGTCATCTA AGAAATACCC AGTAGCATTA 
    TTAGATTTGA CATCTGTTTT TAAGTTTTAA CACGAATTTA TTCATAAAGA 
    TTGAAGTT

    Gene models with high sequence identity

    1. AT1G67890.1 [+] show detail - PAS domain-containing protein tyrosine kinase family protein
      E-value: 7e-13; Score: 72.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR23257 6.90001478563499e-26
    HMMPfam Serine-threonine/tyrosine-protein kinase 0.0095
    HMMPanther PTHR23257:SF80 6.90001478563499e-26

    See the detailed result >

    AT1G67890.1

    Model type
    Protein coding
    Short Description
    PAS domain-containing protein tyrosine kinase family protein
    Computational Description
    PAS domain-containing protein tyrosine kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: PAS domain-containing protein tyrosine kinase family protein (TAIR:AT5G49470.3); Has 128751 Blast hits to 126912 proteins in 4876 species: Archae - 309; Bacteria - 16105; Metazoa - 47584; Fungi - 11405; Plants - 33369; Viruses - 523; Other Eukaryotes - 19456 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR