K16436

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16436

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16436

Determination of introduced cDNA(s)

  • J013095L07 - Rice Full-length cDNAs - Original: J013095L07

    full reading [+] show sequence

    Nucleotide sequence: J013095L07 - full reading 
    GCGTTTTTTC CCCCAATTTC TCGTCTCCCC CCTTCCTCCA ATATATCGGC 
    GGCGATCCCG GCTCGAGGAG AGGAGGCTCC GCCGCGATTT TTTCGGTGTC 
    GCATCGAAAT TATGATTTTC GATGCATTTT AGGCTAAAAG TGCTCGGGTC 
    TGAAACCTAC GTGCTTTTCT TGTCGCCGAA GATGGTGTCA GCAAATATAC 
    ATCGACGCAC ATGAACAGCG ATGATGCGTT GCTGAATCCG TCTGAAGCTG 
    CAATAAGCAT GACGGTTTTG CAAATTATGA TACTAAACCA TTCATGCTGC 
    TACGCCCTCG TCTGGAACTT TCTTCTTCTG ATGCAACCGT GCACAAGCAA 
    ACCTAGCCTC GAAGCGATTG TGATGAGTTT TAGAGGTGGT GCGGGTTCGA 
    TCACGTGGAG TTCTATTGGT GTTCAGTGAC TCTTGGCAAA AGTTCTCTTG 
    TAAAATCGAC GACGATGGAA AGGTACAAAG TGATAAGGGA GATAGGCGAT 
    GGCACCTGTG GGAATGTTTT TAGGGCTTAT AACACTGAAA CAAATGAAAT 
    TGTTGCAGTT AAAAAAATGA AGAGGAAGTT TTTCCAATGG GAAGAGTGCA 
    TTAGTCTGCG AGAGGTGAAG GCACTTCAAA AACTGAATCA TCCCAACATT 
    GTGAAGTTAA AGGAGGTGAC TATGGAAAAT CACGAGTTGT TCTTCATTTT 
    TGAAAACATG GAATGCAATT TGTATGATGT CATAAGAGAA AGGCAAGCTG 
    CTTTCTCAGA AGAGGAGATA CGGAACTTTA TGGTGCAGAT ACTGCAAGGT 
    CTTGCATATA TGCATAACAA CGGTTATTTC CATCGTGACC TGAAACCTGA 
    AAATCTGTTG GTGACAGATG GCACTGTTAA AATTGCTGAC TTTGGGTTGG 
    CAAGAGAAGT ATCTTCCAGT CCTCCTTATA CTGACTATGT TTCCACCAGA 
    TGGTATCGAG CTCCAGAGGT GCTGCTACAA TCGTCAGCTT ACACACCTGC 
    TATTGATATG TGGGCTGTTG GTGCAATTTT GGCTGAGCTT TTCACACTGT 
    CTCCACTTTT CCCTGGTGGA AGCGAGACTG ATCAGCTATA CAAAATATGT 
    GCTGTGCTTG GGACACCGGA TCATACTGTC TGGCCAGAGG GAATGAACCT 
    GCCTCGTTCA AGCAGCTTTA ATTTTTTCCA GATCCCACCA AGAAATCTAT 
    GGGAGCTTAT TCCTAATGCT ACTTTGGAAG CTATCGACTT GATTCAGCAA 
    CTTTGTTCCT GGGATCCACG AAGAAGGCCA ACTGCTGAGC AATCACTACA 
    GCATCCGTTC TTTAATGTGG GCAACTGGGT ACCAAGGCCA CTCCATGCCT 
    CTCACACAAA GACAATTGAA ACTAGACCGA ATCCAAGGTT GGAACTGAAC 
    CTGTGGGATT TTGGTACAAA CCTGAGGACA ACTACCTTGA TTTAACTCTG 
    AGTCTAAAGC CAAGTTTTCC TGGAACAGAT TTTTCTAACA ATGTTCCAGA 
    GCATACAAAA GAGGAAATTC TGCTGTACCC AGGATTTGAA AATCCTCCTG 
    TGCAGTCAGG GTTTTGGCCT CTCGTTGCAT CAGACCGGCC AATGGGCGAT 
    GTTCCAGCCA TGTCATCCTG GCCACAGGCA TATGTGGTTG ACGGCCAAGC 
    CACACTTCCA GCTGTTGGAT TCTCTGGTTC TCCATTCGGT TTGTCCCCCT 
    TACAACCAAA TCTGTTTGAG AACCGTTCGT TCGCAACACC CATCCGGCAG 
    GTCAATTTCT TCTGAGGGGA TACAATTAAC AGATTGAGCA CTGAAACTAT 
    TTTTCAGTCC ATACATTCAA CTTGTTCCTT TATACATTGA ACTCAAATAA 
    ACGGGGGCGG CAGATGAAAT GTATATAATC GTAGCTTGTT TCCTTTTTCT 
    TTTCTCCCCA TCTAAATTCC CCTCACGGAG TACCCTATAA TGTCAGATTC 
    TATATTTATC TAGATTGTGA ATATGTGACT TTCCAAAACA GTTTTGTACG 
    TCGATTTGTC AAATGATAAC AGCAAGTATG GATGAGCGAT AACTGACGAT 
    TTGCG

    Gene models with high sequence identity

    1. AT4G13020.1 [+] show detail - Protein kinase superfamily protein
      E-value: 9e-131; Score: 47.40

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 48.569
    superfamily Protein kinase-like domain 6.1e-91
    HMMSmart Serine/threonine-protein kinase domain 3.7e-102
    HMMSmart Tyrosine-protein kinase, catalytic domain 9.4e-14
    HMMPanther MAK/IME2(YEAST)-RELATED 1e-138
    HMMPanther CDC2, MAP KINASE-RELATED 1e-138
    PatternScan Serine/threonine-protein kinase, active site 0
    Gene3D no description 2.1e-69
    HMMPfam Serine/threonine-protein kinase-like domain 3e-75

    See the detailed result >

    AT4G13020.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Curator Summary
    Encodes a member of the cdc2+ family of protein kinases MHK. Similar to the mak genes of rats. mak encodes a protein kinase that may play a role in spermatogenesis.
    Computational Description
    MHK; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G19110.1); Has 121157 Blast hits to 119864 proteins in 4358 species: Archae - 99; Bacteria - 14030; Metazoa - 46989; Fungi - 12804; Plants - 26171; Viruses - 481; Other Eukaryotes - 20583 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR