K16444

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16444

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16444

Determination of introduced cDNA(s)

  • J023144H13 - Rice Full-length cDNAs - Original: J023144H13

    full reading [+] show sequence

    Nucleotide sequence: J023144H13 - full reading 
    GCGATGCCGA AGCGCCCGGC GAGCGGCCGC CATGGCCGTG ACCGGCCACA 
    GTTCAGTCGC AGGTGTAAAC GCCGATTTCG CGGCCTTAGC CACGAAGGGA 
    GTCGCCGAAC AAAGGATAGT CCCCACCCTG TCCGGCTCGG TGATGACGGC 
    AGTTAGATCG GCGGATGGGG AATTGCGGCA GCGGTGAGCC GGTGACTGTG 
    GGGAATTACG GCAGCGGCAG CAGCGCCGGC AGGGGAGGCT GCTACTGTTG 
    TTCATACACG AGTAGCCCCG GCACGTTGGG CAGAAGCTTA TCGAGGTCGG 
    AGAGAGGTGC CCGCTTCATC TCCAGAGGAG ACAGTAAGTA ACCTACCCCT 
    TTGGCCTTTG CTCGAGTGCT AGATTCTCTC ACAAATTGCT GTGATTTCGC 
    TAGTTTGGAC ACTCGTAGAT CTAATTGGGT CAATCTAGCA TATGTTAATT 
    TATCCATTGA ATTGTTTGCA ATATGTCAAT TTCTGAAGGA AATAATGGGA 
    ATACTTCAGA AGCGATTGGA CCCCGGGGCT TGAATTTCCG GATAGATCCA 
    TAGAAAATTA AATAAGTTGA GATTGAAGTT CTTCGTTTCA AACATACTTT 
    GATGGAATTT GGAGCATATT TTCTTATTCC TTTTGGAGTC TTAGTATGTA 
    AGAGTAAGAC TGACTGCAAT TTAAGATATT CATAACCTTG TCTTTCTAAA 
    ATAATAAGGA AACCAGAGTA GCTTCAGCCT TCTTGTTTAG CTGCCTTCAA 
    CAACAAGACT ACAGCTGAGA GATGTTAAGC CAAAACGCCA AATTTCGATG 
    GTTTTGTATT AATTCTGAAT ACTGAAGGTC ATCTTTTTCA CAGAGTTGGT 
    AGTCATTGTA GGAATTCTGA ATTCACAAGG CTAATCTCTT CAACATTCAG 
    TATTTCACTA ACAGCATATG CTTTGTCAGT AGCAGAGCTT GTGCTTTCCG 
    CATTTAACTT GTGAACCGGA TGTTCTCTGC AAAAAGAAAT GGCATCGGTG 
    AATTTCATGG AGAATGCTTG TACCAAACAG CACAAAAAAG TGGGAAGATA 
    ATGAGGTGTC TTACAGTGAT TCACAGAAGC TTTGCTTTGG AGGCATGTCC 
    AGTTCGTCTA AAGCTTTCTC AAACATATCT AAAACCTGGG TTATTGTTGG 
    GCGGTGCATA GGTAATACTT GTACACACCA CAAGCCAATT AAAGTCATCT 
    TTTTGGCGAT TTCCTCAACC TCACTTGTGA CTTCACAAGC TTGCAATCCA 
    TCACCTTGAT AAAAGTGGTC ATAAATCCAG TCTGGGAAAT ATTTTTCACT 
    AGAGTTTTGA ACCATTGATT TCACATTTTT CCGGCCTCCA ATCATCTCAA 
    GCAACATCAT TCCGTAACTA TAAACATCCG ACTTTATTGA AACAACCCCA 
    AAAGACCGAT ACAAAACTTC AGGAGCAATG AATCCAATTG TTCCTCTAGC 
    ACCGGTCATT GAAAGCTTGC TCTCCTTGGT ACAACACAAT TTAGCTAAAC 
    CAAAATCGGC AATCTTTGGG CAAAAATCCT GGTCTAGAAG GATATTTTGA 
    GGCTTGATAT CAAAATGCAC GATTCGTGTA TTACAACCAT GGTGCAAGTA 
    TTCTAGCCCA CGAGCAATCC CAATTGCTAT ATCATAGAGC TTTTCCCATC 
    CTAAAGTTTC TTTGGGTTTT TCTGAGTAAA TGTAGTTATC CAGAGAACTG 
    TTGGGCATGT AGTCATATAT AAGAGCTCGT TTTGAGCCCT CCAAACAAAA 
    TCCAAATAAG CTAACAATAT TAACATGTGA TGTCCTGCCA ATGCTCATTA 
    CCTCGTTTAC GAATTCTTCC CCATTTCCTT TGGAGTCATG CAAGAATTTC 
    ACAGCAACCA GACGACCATC TTGTAGCTTT CCTTTGAAAA CCACACCATA 
    ACCACCTTCT CCAAGCTTAT TACTCAGAAA TGATGTTATC TTTGCTACCT 
    CCGAATACTT GTATCTTTTT GGAGCTAGGG ATCCGTACGA TACTATTAAT 
    TTCTGAATGT TACTTTCATT TCTGCTGCGA GTCTTGTTGC ATAGGAGATA 
    GCACAATATT TGCCCCTTTC TATGCCATAT CAGCACATAA GCACATGGAA 
    AGAGCAGGCT TACAGCTACT GGTATCAAAA CTGAGAAAAA AAAGAGAAGT 
    TATATTCTTT TTCAAGATCA TAAGTCGTAT TATTGATATC AATATTTTGA 
    TTTTTTTTTA GTAAAGAACT AATTAAAAAG CATAAGGGCG GCAAAAGTAG 
    GACTACACTA GGCCATAAAT TTTGCTCCAT ATCTGACACA ATTTTGAGGG 
    TTGCTTGTTT TTAATATTCA TCAATTGAAA TAAAGCATAA ATGATTATAG 
    CAGGGTAGAT TTTGAAAAGA ATTTTTGTTA TATAAAATAA CTACTCTATT 
    TGTTCTACTT TAGTTGTCAC TTTGGACATC AACATAGTCT TCAATTCACA 
    CATATGGCCA CTACATTTGT AGTTATATGC TAGTACGAAA TACTGAAACT 
    ACACTGATAT GAAAAAAAAA AAGGCCAGTC CACTGGTGTC ATTTTCATGT 
    GAGAAATTGT ATATATTAGT GACTGAAATT TTTAAGGCTT GACTGCATAG 
    ATTCTGAAAT GGCAGTCATT AAAGAATAAT AGCTGAAACA GGGATGGGTT 
    AGATATGAAA GAAGAATAAA ATTTTACATA CCTATTAGCG TTTTCTTCCT 
    GCCATTGCTC TTGCTATCTG GAATAGAACA GAACATTAAT CGTCAACGCA 
    TTTTGAGTAG AACTATATTT ATGATTTCGT TAAAGAAAGA AACGAAGAAT 
    GTGTGAAGAA ATTTTAATAT TTTGAAGATG AATGATGGGA AATATATTGC 
    AAGATAGCGA GGAGCATGGG CCGTTCGTCT TTCTTTTGAT GAAAGATTGA 
    AGAAGTATGT CAATTAAACC TCGATTTAAT ATAACCATAG GAATTATATG 
    TTCTTTATCT CATACTAGGT TGATCGATTG TCGATATAGT TGTGTAACAC 
    TACTTTGTTT TTGTTAGTGT TTTTCCCTGC ACTGTATAAC AAATTGATAT 
    TCATGCAGAG TTCACTTCTT TACAGCTAAC TGATTGTCTA GAACAGTCCA 
    ACACTTGACT GAACTGTTCA ACAAAAGGAT TGACCGTAGC TAATGTAATA 
    ATAGTGCACT GAAAGTATTG AATATTGTCC TGTCATGTTA CC

    Gene models with high sequence identity

    1. AT5G38260.1 [+] show detail - Protein kinase superfamily protein
      E-value: 3e-97; Score: 353.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Serine/threonine-protein kinase-like domain 2.8e-45
    ProfileScan Protein kinase, catalytic domain 36.697
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 5.6e-29
    HMMSmart Tyrosine-protein kinase, catalytic domain 3.6e-19
    Gene3D no description 7.7e-20
    Gene3D no description 9.2e-47
    HMMPanther RECEPTOR-LIKE PROTEIN KINASE 1.4e-168
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.4e-168
    superfamily Protein kinase-like domain 2.3e-76

    See the detailed result >

    AT5G38260.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR