K16449

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16449

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16449

Determination of introduced cDNA(s)

  • J023143D12 - Rice Full-length cDNAs - Original: J023143D12

    full reading [+] show sequence

    Nucleotide sequence: J023143D12 - full reading 
    GATTCTCTGT TCTTGCGAGG TGCTTCTTGT TCTTGAGGTT GGCCATGGCG 
    GATCACCAGC GGATGAGGAT TCACCCCGTC GACCTGGAGG CCGGTGGCCG 
    GCACCGGCCC ACGGCGCCGC TGGTGCCCGG CGGCTCGTTC CGCTCCGACA 
    AGGGCGACCC GGCGGCGCTC TACCTGGTGT TCGACCCCAA GGCGCCGCGC 
    TACTCGGTGA CGGCGACGAA CCCGAACGCG CGCATCGGCA TCTACTACGA 
    GGCCGGGTCC AGCCTCAGCG TGTGGTACGA CGCGCACCGC CTGGCGCGCG 
    GCGCGCTCCC GGCGTTCTAC CAGGGCCACC GCAACACGAC GGTGCTGGCC 
    GTCGTCATGG CCGGGCAGGC GCAGCTCGGC GGCGCGGTGA TGTCGGCGCT 
    GCAGGACGCG CAGCGCACGG GCGCCGTGCC GCTCGTGTTC CGCGCCGACG 
    TCCCCGTGCG CGTCGAGCTC GGCAGCCTCA GGCTGTGGAA GGTCACGTCG 
    CGGGTGCGCT GCGACCTCGT CGTCGACAGC CTCGGCGTCA ACAACCCCGT 
    CAACATCAAG GCCAGCAACT GCAAGTTCAG CTTGAAGCTG TGACGACGCC 
    ATTGATGCTT CGATTCTTTG ATTTAGTTCA GTTCTTGCCT AGTTCTTGCC 
    ATCTTGGTGA TGGATTCTTT CAGGATCGAG TGCTTTGTAC TATTTGCATT 
    GGTGCACTCC TCCTGCAGCT TGTGTACATC CTGTGTAGTT GAGAGAGATA 
    ATAATATATG CATGATTAGT ATATTTTTCG TAGTGT

    Gene models with high sequence identity

    1. AT1G65690.1 [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
      E-value: 1e-39; Score: 160.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G65690.1

    Model type
    Protein coding
    Short Description
    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
    Computational Description
    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 25 (TAIR:AT5G36970.1); Has 985 Blast hits to 984 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 985; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR