K16451

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16451

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16451

Determination of introduced cDNA(s)

  • J033086A13 - Rice Full-length cDNAs - Original: J033086A13

    full reading [+] show sequence

    Nucleotide sequence: J033086A13 - full reading
    GTGCGTCGCT ACTCCCAAAT CCGCGAAAAA TCGACAGAGA CCAGCCGCCC 
    AATCTGCCTG ATCCATCGGA GGAGGACGAC GAGGAGGAGG TTTGCGAGGC
    AGCGGCAGGG AGAGGAAGAT GTCTTCGCTG CGGAACGCGA TCCAGCGGCG
    CGCTCACAAG GAGCGCGCCC AGCCGGAGTC GAGGAAGAAG TTCGGGCTTC
    TGGAGAAGCA CAAGGACTAC ATCGTTCGGG CGAAGGCTTT CCACCAGAAG
    GAGGAAACCA TCAGGAAATT GAAGGAGAAG GCATCATTTA GAAACCCTGA
    TGAGTTCTAT TTTAAGATGA TCAACAGCAA GACTGTTGAT GGAATTCATA
    GGCCTAAGCC TGAAGCAAAC AAGTATACTG AAGATGAACT CATGCTGCTA
    AAAACTAAAG ATATGGGATA CATCCTTCAG GGTATTCAGA GTGAAAAGAA
    GAAAATTGAA AAATTAAGCT CCATGCTTCA TGAACTAGAC AACAAGCGAC
    CAAACAAGCA TGTTTACTTT GCTGAAGACA GAGAAGAGGT CAAAGAAATA
    CAATCTAGAA TAGAACAAAA GAGCAGTTCA CTTGGTTTGG ACAACATCCC
    TTCGCGTATA AAGAGGAAAA CTGCTTCGTC CTATAGGGAG TTAGAGGAGA
    GGAAACAGAG GGTTCAAAAG CTTGAGAAAC TGTATGCAGA CATGGCCTTG
    CAGAAAGAGT TGAAGAAACC TGGACGGAAA AGAAAACTCC GTGAGGATGA
    GATTGAGAAT CAAACATCCC GGCCTGTTTA TAAGTGGCGA GCACAACGGA
    AGCGGTAAGA TGATGTGAAT GGCTTACAAT GGAATCATTG AGAATATATG
    GAGTAACCAG TAGATCCTAA AGCAAACGGA GACTATTGTT TATTTTCTTG
    AATTCTAATG CATTTACATG TAGCAGTGCC CCTCCACAAC CGTCTCTCTT
    CATAGCCTTC ACTTGATTGT ATTTGTGGAT CCATGTTGGA TACCACTTTC
    TGCTACCTGC TACTGATGTG ATGTACCTCT GCTTTTTACA AAATGTTGGG
    TAACTACATC

    Gene models with high sequence identity

    1. AT3G60360.1 [+] show detail - embryo sac development arrest 14
      E-value: 4e-77; Score: 285.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPIR Small-subunit processome, Utp11 3.3e-83
    HMMPanther Small-subunit processome, Utp11 1.1e-75
    HMMPfam Small-subunit processome, Utp11 1.3e-61

    See the detailed result >

    AT3G60360.1

    Model type
    Protein coding
    Short Description
    embryo sac development arrest 14
    Computational Description
    EMBRYO SAC DEVELOPMENT ARREST 14 (EDA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: small-subunit processome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp11 (InterPro:IPR007144); Has 434 Blast hits to 428 proteins in 209 species: Archae - 4; Bacteria - 1; Metazoa - 127; Fungi - 141; Plants - 59; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR