K16508

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16508

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16508

Determination of introduced cDNA(s)

J013001C20 - Rice Full-length cDNAs - Original: J013001C20

full reading [+] show sequence

GAGATCGCAG GAAATCGTAT CTGCCTACTT TTCGAGAGCT TAACAAGGGA 
GAGCTCCTTA ATTGCCACGT CCCGCCCGCT CACTGCCTAA GCTTCCAAGT 
TCCAACGGGG ACATCTCTTC TCTTGCACCT TCCTGATTTC ATGGATCGGA 
CAAGCCAGTG GGTCTCGTCG CCGGACATCC CCGCCGATCT TCTCATCCGG 
ATCGCCGACG ACGTCTTCCC TCTCCATAAG GCGGTGATGG TGCCCAAGTG 
CTGCTACATC CGCAAGGCCG TAGCGGCGGC GCGCGGTGGC GCAACGGCCA 
CCGTCGACCT CGACCTGTCC GCGCTGCCCG GCGCCGCCGA CGCCTTCGAC 
AAGGTGGCGC GCTACTGCTA CGGCGCCAAC TTCGAGCTAT CCGTGCGCAA 
CGCGGCCGCG CTCCTCTGCG CCGCCGCCTT CCTCGACATG CACCCAACGG 
ACGGCGGCCT GGCGCGCCGC GTCGAGGAGT TCCTGGCCAA GGTAGGCCTC 
CGCACGCTGC CCGGCGCCGT CGCCGTCCTG CGCTCCTGCG AGGGGCTCCT 
CCCGGCCGCC GAGGAGATCG GCGTCGTGCA GCGATCAGCT GATGCTATCG 
CGCTCAGGAT CTGCAACGAG GTGCTGTTCC CGACGAGGTC GCCGCCCGAG 
TGGTGGACGG CGGAGCTCGC CGCCCTCTCG CCGGCGTCGT TCCACAAGGT 
CATCACGGCG CTGCGCTGCC GCCGCGCTGA ACCCGAGGTG CTTGTCGCTG 
CGGCGACCGC TTACGCTGAG CTCTTGCTGG CCGAAGTGCT CGCCGCCGAC 
GGCCATGCTG CTGATCACTC CGGGATGCAC CGCGCGCTTG TCGAGTCCGT 
GGTGGCCGTG CTCCCTTCCA CGGACGACGC GCCCCTCCCC GCCGCGTTCC 
TCTGCCACCT CCTCCACGTC GCCATCACCA TCGGCGCATC CGCCAAGACG 
TGCCACGACC TGGAGCTCCG CGTGGCGGCG GTGCTCGACC AGGCCACCGC 
GGGCGACCTG CTGACCGTCG CGCTCGACGG CGCCGGTGAG CGCGTCCAGA 
ACGTCGACGC CGTGCGCCGC ATCATCACCG CCTTCGTGGA GCGCGACTCT 
GCGGCGTCAT CGGGCGGCGG CGCGAACGGC CGGAACCGGA GGGCGTCCCT 
GAGCGGAGCC GGGGCGCTGC AGGGCGGCGG TGGCGCGATG CAGACGGTGG 
CGAAGACCGT GGACGAGGTC GCGGCGGAGA TCGCGACGGA GGAGTCGCTG 
CCGATCTCCA AGTTCGTGGG GCTCGCCGGC GCGGTGCCGA AGGAGGCGCG 
CGCGACGCAC GACTGCCTGT ACCGCGCCGT CGACATCTAC CTGAAGGCGC 
ACCCGGCGCT GGAGGAGATG GAGAGGGAGA AGGTGTGCAG CGTGATGGAC 
CCGCTGAAGC TGTCGTACCA GGGTCGCCTC CACGCGTCAC AGAACAATCG 
GCTCCCGCTG CAGGCCGTGC TGAGCGCGCT CTACTACGAC CGGCTCAAGC 
TCCGCAGCGG AGACGAGGGC GGCGGCGGGT GGGACGCGTA TGGGAATGGC 
GTGATGAGGT CGTCGGCGGC GGGGTCGGCG AGGAAGCAGG CGAAGGAGGA 
GGCGTCGCTG GCGAGGGAGA ACGAGGCGCT GCGGTCGGAG CTGGCGCGGA 
TGCGGGCGTA CGTGTCGGGG ATGCAGCAGC AGAGCAAGGG GTCGTCGTCG 
TCGAGGGGGA AGAAGGGCTC GTGGTTGCGG ACGTTGAGCC GGCTGAACCC 
GTTCAAGGCC GGCATCTGGG GCAAGGACAC GTCGGGCATC GTCGACGGGA 
AGACGGACGC CATGAATTCC GTCAAGTCCA AGAGGAGGAG GTTCTCCATT 
AGCTAGGCTA GCTTAGTGTT GAGATGATCC ATGTCATCTC GTGCTAGCTA 
CATATATGCG TTGTCAATGA CTGTATATTG ATTGATTGGT TATTCGCAAG 
AAACATGACT GTTCTTGTGT AGTCTACTGT AAATTGTAAG TTTGTGTCCG 
CAAAAACGAA CTAATGTTTG GATTGGATTG GTCAAAAGTC

Gene models with high sequence identity

AT2G30520.1 [+] show detail - Phototropic-responsive NPH3 family protein
E-value: 1e-98; Score: 357.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
superfamily	BTB/POZ fold	2.1e-09
HMMPfam	NPH3	3.6e-65

See the detailed result >

AT2G30520.1

Model type: Protein coding
Short Description: Phototropic-responsive NPH3 family protein
Curator Summary: light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis
Computational Description: ROOT PHOTOTROPISM 2 (RPT2); FUNCTIONS IN: signal transducer activity; INVOLVED IN: phototropism; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G67385.1); Has 1044 Blast hits to 1009 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 0; Plants - 865; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link: InterPro Scan - TAIR