K16511

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16511

Determination of introduced cDNA(s)

J023022E19 - Rice Full-length cDNAs - Original: J023022E19

full reading [+] show sequence

GTTTCCCTTC TCCCTTCCCC TCCCGCCGCG AAGCCACCAG CGCCACCAGC 
TTCCACGCCT CCACTGCCGC CACGAGAGCC GAACCACGCA GACCTAAGCC 
AGAGAGATCG CGAGAGGGAG CCTCCGCTCC TTCGCTTAGC GGCGGCGGAG 
ACCATGGCGA GCTCCGGGGA GGAAGGGCGG GTGGTGGTGG ACCTCCGCTC 
GGCGGCGGAG TCGGCGGGCG GCGGCGGCGG CGACGAGGAG GCCCACGCCG 
CGCCGCTCCA CGAGATCGAG TCCCTTTGCA TGCGCTGCGG CGACAACGGC 
ACCACGAGGC TTCTGATGAC CATGATTCCG CACTTCCGGG AGGTGGTTCT 
GATGGCTTTC GAGTGCCCGC ATTGCGGTGA GAGGAACAAT GAGGTTCAGT 
TTGCTGGACA GCTCCAGCCG AAGGGATGTT GTTACCGTTT GGAGGTCCCG 
CGCGGGCAGA ACGAGATACT GAACCGTCAG GTTGTGAAAT CTGATTCAGC 
AACTATTAAG ATTCCAGAAC TGGACTTTGA GATCCCTCCA GAAGCTCAAC 
GTGGATCACT TTCAACAGTG GAAGGGATTA TTATGCGAGC TGTGGATGAG 
CTGCAGGCAC TTCAAGATGA AAGAAAGAAA GTGGATCCTC AAAAGGCCGA 
AGCTATTGAT AAATTTTTAG CAAAATTGAG ATCTCTTGGA TTAGGAGAAG 
CTGCTTTCAC CTTTGTTCTT GATGATCCTG CTGGAAATAG CTTCATTGAA 
AACCAGAATG CACCTTCATC AGATCCTTTG TTATCTGTGA GATTCTATGA 
AAGGATGCGT GAGCAACAGG CAGCACTTGG TTTTCTTGTT GAACCATCCA 
CAGAAGAACC TGGGGATCAG CCTGTTAATC ATGCTTCAAC TGTGGAAGGG 
AACTCTGAGG TGTTGCAGGA GCCCCACGGT TCGGTTGGAG CTGTTGCAGG 
TCGCCGTGCT ATAGCTCAAG GAAACCCTGA TGAAGTTGCT GCAGCGCTGT 
GCAGATATTC AGCACCAGAA GAGGTTGATA CTTTGCCATC AACATGTGGG 
GCCTGTGGAA CTGAGTGTGT CACTCGTTTC TTTGCTACAA AAATCCCATA 
TTTTCGTGAG GTTATTGTTA TGGCAACAAC ATGCGACATG TGCGGCTATC 
GCAACTCAGA GTTGAAGCCT GGTGGTGAAA TCCCAGCCAA AGGAAAGAAA 
ATTACACTAC GTGTGCAGAA CGGAAAAGAT CTTACACGTG ATGTCATAAA 
GTCAGATTCA GCTGGCGTAA AAGTACCTGA ACTCGAGTTG GAACTAGCAA 
GTGGAACATT GGGTGGTATT GTTACAACAG TTGAAGGTTT AATTGTGAAA 
ATATGCGAGG CTCTGCAGAG AGTGCATGGA TTCCATTTGG GTGATAGCAC 
ACTGGAATGG AAAAAGAAGA AATGGGAGGA TTTCAACGAT AGATTATCCA 
AGCTTCTAAG TTTACAAGAG CCTTGGACTT TAATTATCGA TGATGGATTG 
GCAGCTTCAT TTGTTGCTCC AGCTACCGAT TCTTTAGAAG ATGACAACCA 
GCTAACCATT GAGGAGTATG TGAGGAGCTG GGAGCAGAAT GAGGAGCTTG 
GCTTGAATGA CATGGACACA TCGTCTGCTG ACGCCGCCTA CAACACCACC 
AACCCATAAT GTACTCAATG TTGTAACATG TGATATTATC AAATATACTT 
ATTGTGCTCC ATGTTGTAGT AAGTTGCGAT ATTTCTCATT TTAAATCCTC 
AAGTTTTGTG TTAGCCATAG CTTTTGTTTC TGAGACGATC GAAGATATTC 
AGTTGACCAA ATTTGCTTTA TCAGAACGTT TCTTGTTTCT TTGCTTAATT 
ACATTGAACG CCACCGGCAT TGTAGTCGTG CC

Gene models with high sequence identity

AT5G22480.1 [+] show detail - ZPR1 zinc-finger domain protein
E-value: 0; Score: 639.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Zinc finger, ZPR1-type	5.7e-54
HMMPfam	Zinc finger, ZPR1-type	9.6e-47
Coil	coiled-coil	0
HMMSmart	Zinc finger, ZPR1-type	3.6e-81
HMMSmart	Zinc finger, ZPR1-type	8.3e-70
HMMPanther	ZINC-FINGER PROTEIN ZPR1	5.7e-197
HMMTigr	Zinc finger, ZPR1-type	1.9e-30
HMMTigr	Zinc finger, ZPR1-type	3.5e-44

See the detailed result >

AT5G22480.1

Model type: Protein coding
Short Description: ZPR1 zinc-finger domain protein
Computational Description: ZPR1 zinc-finger domain protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, ZPR1-type (InterPro:IPR004457); BEST Arabidopsis thaliana protein match is: ZPR1 zinc-finger domain protein (TAIR:AT5G37340.3); Has 1143 Blast hits to 605 proteins in 280 species: Archae - 310; Bacteria - 0; Metazoa - 225; Fungi - 282; Plants - 53; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
Link: InterPro Scan - TAIR