K16512

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16512

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16512

Determination of introduced cDNA(s)

  • J023081C09 - Rice Full-length cDNAs - Original: J023081C09

    full reading [+] show sequence

    Nucleotide sequence: J023081C09 - full reading 
    GGAACGAAAC ACGCCTTCTT CCCCAACGAC CAAACCAAAG TTTGGGTGAA 
    GAAAAAAAAA TATCGCCGCG TTTTTATCCC CCACGAGACG AGTCGAGACG 
    ACCAAAGCCT AACTAATCGG GGGCAAGACG AGGAGGAGAG CGGATTCTCG 
    TCGGCTTCGG CGACCGGAAG AGGAGAGGAG ACCGACCCCG CGCCGTGTTC 
    CGCCGCCGCC GCCGCCGCCG ACGACGACGA CGGCAAGTAG GAATTTGATT 
    CTCCTGGGGA ATTAACTTGT TAGGAGAAAA GGAATTTGGG ATGGGCGACC 
    ATGTGGTGGT GAATGTGGAA GGCTTGGGAA ACGATGGAGG GGCTGTGGAG 
    AAGCCATCTG AGGCCGTGAA CAGCTCAGTG GTGGCTGCTG CGTCGCTTTC 
    TACGACTGTT GATACGGTCG AGGAGGGCGG TGGAGAGGAG GAGCCGCTCA 
    TCCAGGCGGC GGAGTGCCGT ATATGCCAGG AGGAGGATAG CATCAAGAAC 
    CTCGAGAAGC CTTGTGCTTG CAGTGGCAGC CTCAAGTATG CTCATAGAGC 
    TTGTGTGCAA CGCTGGTGCA ATGAGAAAGG AGACATTACA TGTGAAATCT 
    GTCATGAGCA ATATAAGCAT GGATACACAG CTCCACCTCG TGTTGAACCA 
    GACGATACCA TCATAGATAT CGGTGGTGAT TGGGCACGTG ACCCAAGAAT 
    TATTGCTGTA GCGGCTGCAC AACGTCGTCT TCTTGAAACT GAGTATGATG 
    AATATGCTGG TACTGATGCT AGTGGTGCTG CATTCTGCCG TTCTGCTGCA 
    CTTATACTAA TGGCCTTGTT GCTATTGAGG CATGCTTTGT CTATCTCAGA 
    CAATGAAGGA GATGATGATG CTTCTACCAT GTTCTCGCTC TTTCTACTTC 
    GAGCTGCTGG ATTTCTGCTG CCATGCTATA TCATGGCTTG GATATTCAGT 
    ATTTTGCATC GCCGGCGACA AAGACAGGAA GCGGCTGCAA TTGCTGCAGC 
    AGAGGTGGCA TTCATCCTGC AATCAGCCCA AGGCCATGCC CTTCAGTTCA 
    CCATCGCTCC AGACTCCCCC GCCACTCCAC AGCATGAGCC ACAGCAGCAG 
    CAGCCGCAGC CGCAGCCGCA GCAATAGCTA GTTACTTCAG TAGCGTCTCT 
    CAACTACTGA CTCGCACATG CAGAAGAAGA GGATACCTCA GCTAGTGGCC 
    GCTTTGTTGT TTCCTGTTGC AACTGGCCCA GGGACGCTAA GAACCTGGCC 
    TCGCCTTGTG TGGCCGGGTA GAAACCTTGT AAAACGCCAG AGATTCATTT 
    GTTGCAAGCG ACCGCAGCTT AAGCCCCGCT ACCCTTCGAT TTGTCTCTGT 
    GTAACTCAAG CATTGATTTA TTGTAAATTT GTCGTCTGTT GGAGTCCATT 
    TTTTTAGTTC CTTTGCCAAG TGTTTTACTG CCATGTACAG TATTATTACA 
    TGGGAGCTTT TATCTTTCAA AGAATTAATC TGAGTGAGTG TGAAACTGTT 
    AGGCC

    Gene models with high sequence identity

    1. AT3G47550.6 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
      E-value: 9e-64; Score: 241.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 1,8 0.0000000000004
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 0.0000000000004
    HMMSmart Zinc finger, RING-CH-type 2.8e-20
    Gene3D no description 0.00000000000073
    HMMPfam Protein of unknown function DUF3675 1.1e-40
    HMMPfam Zinc finger, C3HC4 RING-type 0.000000071
    ProfileScan Zinc finger, RING-CH-type 21.667

    See the detailed result >

    AT3G47550.6

    Model type
    Protein coding
    Short Description
    RING/FYVE/PHD zinc finger superfamily protein
    Computational Description
    RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G62460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR