K16532

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16532

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16532

Determination of introduced cDNA(s)

  • J033005A18 - Rice Full-length cDNAs - Original: J033005A18

    full reading [+] show sequence

    Nucleotide sequence: J033005A18 - full reading
    GATCTTCTTC TTCTCTCCCG CACTCCAAAG TCGAAACCCT CCCAAAACCC 
    TAAACCCCCC ATGGCGCCGC CCGTCCCCAC TGCCGCCGCT CGCCTCGTCC
    TCCGCCGCCT CCTCTCCACG GCGGTCGCCG AGGCGGAGGC GGCGGCCGTG
    GCTCCCGCCG CCGAGAAGGC CGCGGCGAAG GGCGCCAAGA CGGCGGCGGC
    GGCGGGGGAG GAGAAGGACG CGCGGTCGCT GTACCGGCGG CTCTCGGCGC
    TCGGGGGCGC GGGGGAAGGG AGCGTGTCGC GGGTGATGAA CAAGTGGGTG
    CGCGAGGGGC GGGAGGCGCG CGCGGCGGAT CTCGCCAAGT ACGTCAAGGA
    GCTTCGCAAG TACAAGCGCC ACGCCCACGC CCTCGAGTTG ATGGAATGGA
    TGGTTAACAC TAAGGGTATG AACATGTCAT ACACTAACCA TGCCATACGT
    TTGGATCTCA TTTATAAAGT GCGTGGCATT GAAGCAGCAG AACAATACTT
    TGCTGGCCTC CCTGATCCAG GCAAGAACCA TAAAACTTAT GGTGCACTTT
    TGAACTGTTA TTGCTCTGCT AAAATGGAAG ACAAAGCAAC AGACATCTAT
    CGCAAGATGG ACGAACTAGG AATCTCATCC AGTACTCTTC CTATCAACAA
    CCTGATGTCT CTTTACGTGA AGATAGGCCA GCATAGGAAG GTTACAAGCC
    TGTTTGAGGA GATGAAAGTG AAGAATGTTA AACCGGATAA CCTCACATGC
    TGCCTGCTGA TGAGTAGCTA TGCAGCATTG AACAAGATAG ATACTGTTGG
    AGAGGTTCTA AAAGAAATGG AAGAAAAAAA AGTGGCTCTA GGGTGGTCTG
    CATATAGCAC ACTCGCTTCC CTCTATGTGA ATGCTAATAT GGTTGAAGAA
    GCGGAATCTG CTTTGAAGAA ACTCGAGAGT CTCATCGATG TTCAAGCTGG
    CAGGCAGCCT TTTGATTTCC TTATGAGCCT ATATGCATCA GTAGGCAATC
    TGAGTGAGGT CAACAGAGTG TGGAACCTGA TAAAGGCTAA TTTTCAGAAG
    GTGACTAACA CCAGCTACCT CGGCATGCTT CAAGCTCTTT ATAAACTCAA
    TGACGATGAT CGCATGAAGC AGATTTATGA GGATTGGGAA TCTAATTATG
    AAAATTATGA TGCGAGGCTG ACAAATATGA TGACCCGAGC ACATCTAAGA
    AATGGCTTGA CCAAGGAAGC TGAATTACTA TGGGAGAAGG TTAAGGAAAA
    AGGTGCAGAA TTTGATTCCA AAACATGTGA GTTGTTTCTA GAGCATTACA
    TGGGGAAAGG GGACATGACC TCCGCTTTGA ACTGGGTTGA AAATATGACC
    AAACTTCCCA GGAAGAAATC GAAGCTAGAT CAGGAGAAGA TCAGCTGTTT
    CTTGAAGTAT TTCGAAGAGC ACAAGGATGT GGAAGGTGCC GAAAGGTTTC
    TCAACTGCTT GAGAACGTCA GGATGCATTG ATGGCAAGGC ATATGAGTCC
    CTCCTGCGGA CCTACTTGGC GGCTGGCAAG ACAAGCCGTT CGATCCGCCA
    AATGATCAAG GAAGATAAGA TTGAGATATG CTATGGCATC GGGAAATTAC
    TCAAGAGGAT TGCCGACAAG GGACGCTGAA ATGTTTATCC TCGGTAATTT
    TACTTTGTCG GTGACACGTG ATTCTTCGGC GAGCGGCACA AAGCAGATTC
    GTTTGAGTGA ACTGTTCTCC CTTCTTCCTA CTGCTCCATG TAGAGGATGA
    TATACCTCAT GGCTAGGATG CTGTTCCAGC CTTTTCTTGC TTTTTTTTTT
    CAAGAAGCAG AGGCATGCTA GGGTAAAGGG TTTTTTCTTC AAGTGCAACG
    TGTAGTCTTG TCTGAGGAGG CTTTTCTCCA ACACTTCTTT TTTGCTTACT
    TTCTGAACGA AATGGCTTCT CCAGACATAC AGTACTGAAG CAAGAATCCT
    ACTACAGAAT CGTTGCTGTT TCCATCTCTT GTAGTCAGTG TGCTATCAGT
    TTGATGCCCT GACAATGATA TGTGCATGCT AGTCCCAAGT GTGTTGTGGA
    TAAGTCTTTG TGAACAGGAG AAGCCATTCG GACAGGAAGT AATTGCGTGC
    AGAACGAGAG ACAAGGCCTT TCAAGAGAAC ACCTTGCATA GGCTTCTGTC
    TTGTCATCCC GTGCAAAGGG ATCGAATATG TTAAATCAAA TTTGAGGTAA
    TTTATTTGGT C

    Gene models with high sequence identity

    1. AT4G01990.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 1e-84; Score: 311.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther DNA-BINDING PROTEIN 1.4e-113
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1.4e-113
    ProfileScan Pentatricopeptide repeat 10.622
    ProfileScan Pentatricopeptide repeat 9.427
    ProfileScan Pentatricopeptide repeat 8.265
    ProfileScan Pentatricopeptide repeat 6.029
    ProfileScan Pentatricopeptide repeat 5.174
    ProfileScan Pentatricopeptide repeat 8.155
    ProfileScan Pentatricopeptide repeat 5.163
    ProfileScan Pentatricopeptide repeat 5.733
    ProfileScan Pentatricopeptide repeat 5.525
    superfamily TPR-like 4.8e-13
    superfamily TPR-like 0.00024
    HMMTigr Pentatricopeptide repeat 3e-07
    HMMTigr Pentatricopeptide repeat 0.0015
    HMMTigr Pentatricopeptide repeat 0.02
    HMMTigr Pentatricopeptide repeat 0.38
    HMMTigr Pentatricopeptide repeat 0.093
    HMMPfam Pentatricopeptide repeat 2.6e-05
    HMMPfam Pentatricopeptide repeat 0.00044
    HMMPfam Pentatricopeptide repeat 0.15
    HMMPfam Pentatricopeptide repeat 0.073
    HMMPfam Pentatricopeptide repeat 0.073
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT4G01990.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02370.1); Has 4131 Blast hits to 2907 proteins in 125 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 28; Plants - 4015; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR