K16539

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16539

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16539

Determination of introduced cDNA(s)

  • J033069D02 - Rice Full-length cDNAs - Original: J033069D02

    full reading [+] show sequence

    Nucleotide sequence: J033069D02 - full reading 
    GCTCCTGGCG GCCTAGTATT TTGCAAGAGC AGAGTGAGAG TAGGAGAGCT 
    TGAGTTGAGG CCTTGTGGGT TTGCACACAG AACAGCTTGG GAAAATGTCA 
    CAGTGCCCAA CTCATGTCGC TCTCCGGTTG CTTGCTCTGC TCTTCCTGCT 
    TCCAGCTGCG TGGTCCGCGA CGTTCACGAT GACCAACAAT TGCGGCTACA 
    CGGTGTGGCC TGGGCTGCTG TCGGGTGCCG GCACGGCGCC GCTGTCGACG 
    ACAGGGTTCG CGCTGGCGCA CGGCGCGTCG GCGACGGTGG ACGCGCCGGC 
    GAGCTGGTCG GGGCGCATGT GGGCGCGCAC GCTCTGCGCC GAGGACGCGA 
    CAGGCAAGTT CACCTGCGCC ACGGGGGACT GTGGCTCGGG TGGCATCCAG 
    TGCAACGGCG GTGGCGCGGC GCCGCCCGCC ACGCTCATGG AGTTCACGCT 
    CGACGGCTCC GGCGGCATGG ACTTCTTCGA CGTGAGCCTC GTCGACGGGT 
    ATAACCTGCC CATGATCATC GTGCCGCAGG GCGGGGGCGC CGCAGCGCCG 
    GCCGGAAGTG GCGGCGGCAG CGGCGGCAAG TGCATGGCCA CGGGCTGCCT 
    CGTCGACCTA AACGGCGCGT GCCCGGCCGA CCTGAGGGTC ATGGCGGCGA 
    GCACCGGCAC CGGCGCCGCC GCTCCCGGCG GGGGGCCCGT GGCTTGCCGC 
    AGCGCGTGCG AGGCGTTCGG GTCGCCGCAG TACTGCTGCA GCGGCGCGTA 
    CGGGAACCCG AACACCTGCC GGCCGTCGAC CTACTCCCAG TTCTTCAAGA 
    ACGCGTGCCC TCGCGCCTAC AGCTACGCGT ACGACGACTC CACCTCCACA 
    TTCACCTGCA CCGCCGGCAC CAACTACGTC ATCACCTTCT GCCCAAGCAC 
    CACCAGCGGG AAGTACTCCG GCGGTGAGAA CCCGCAGGCG GCCGGCGTGC 
    CGTCCACCAA CGACACGATG GTCGTCCTCG GCGCCGAGCA GCTCTCCACC 
    GCCTCGTCCG CCGCCGCCCA TGCTGCGCCG CAGCTCACGC TACCACTACT 
    ACCACTCGTC GTCGTCGCCG CCCTCGTTGC CGCCATGATC TAGGCCGGCC 
    GGTACACCGT ACACGTACAA AGGTGGCAAT CACCACCATG CCTACTCCTC 
    TCGCCGCTGT ACGTGCCGCG GGGCCCACCA GCGGCTAATC CTGCTCCGGA 
    GGTGTCCTAA TCCGGCCCGT CTCTTGTGGC GTGACCGAGG CAGAGATAAG 
    ATTCTCCGAA CAGAGCACGA GGAAAGGTTG GACAGTGCTA CGACGACTGA 
    AAACCGATCG AGAAGGGAGA AAACAAGAGT TGTATCCACA CCGATCGCAG 
    CTTTCTTCTC GATTAGTTTA TGTCATAGGC TTAGAGATTA CAGAGTGGTA 
    GTTAGTGATG TACTGTTGGT TTTAGTCTTC TCTTTTCCTA CGCTTCCTTG 
    AGTTGTTGAG CGGAAACGAA TAGATGATGT ATTTACTCGA TCACCGTTTG 
    TTCGTCGCGA TCACGGATGA TTGCGGCGGC GACTTTGATC AGCTGGGAAA 
    AGAAAGGGCA CGGCCATATT TCGTTCGTTG C

    Gene models with high sequence identity

    1. AT1G20030.2 [+] show detail - Pathogenesis-related thaumatin superfamily protein
      E-value: 2e-81; Score: 300.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Thaumatin, pathogenesis-related 2.5e-107
    HMMPfam Thaumatin, pathogenesis-related 3.2e-89
    Gene3D Thaumatin, pathogenesis-related 3.2e-75
    ProfileScan Thaumatin, pathogenesis-related 46.19
    FPrintScan Thaumatin, pathogenesis-related 2.9e-12
    FPrintScan Thaumatin, pathogenesis-related 2.9e-12
    FPrintScan Thaumatin, pathogenesis-related 2.9e-12
    superfamily Thaumatin, pathogenesis-related 2.3e-123
    PatternScan Thaumatin, conserved site 0

    See the detailed result >

    AT1G20030.2

    Model type
    Protein coding
    Short Description
    Pathogenesis-related thaumatin superfamily protein
    Computational Description
    Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR