K16541

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16541

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16541

Determination of introduced cDNA(s)

  • J023142E05 - Rice Full-length cDNAs - Original: J023142E05

    full reading [+] show sequence

    Nucleotide sequence: J023142E05 - full reading 
    GGTTGCAACC GCGAGCCTCG CTCGTCTCCT CTTCCTCCTC CTCCTCCTCG 
    ACATGGTCAG CGAGCAAACG GCGCCGGTGG CGACCGCCGA GGCGGAGCTG 
    GAGAGCAGCG CCGCGCCGCC CGTCAAGCCC GACGAGGCCG CGGCCAAGGC 
    GCAGCCGGAG GACGACGCCC CCGTTGTGGA GGATGCCAAG GATGATGACG 
    ACGACGAAGA AGACGACGAT GACGACGAGG ATGAGGATGA AGACGGTGAA 
    CAAGGTGCAA TCGGAAACGA GGGCTCCAAG CAGAGCAGGA GCGAGAAGAA 
    GAGCCGCAAG GCCATGATGA AGCTCGGAAT GAAACCCGTC ACGGGAGTCA 
    GCAGGATTAC CATCAAGAGA GCCAAGAATA TACTGTTCGT GGTGTCCAAG 
    CCTGACGTCT TCAAGAGCCC GACGTCGGAG ACGTACGTCA TATTCGGGGA 
    GGCCAAGATC GAGGACCTGA GCTCCCAGCT GCAGGCGCAG GCCGCGCAGC 
    AGTTCAGGAT GCAAGACCTG AGCAAGGTGA TGTCCAAGCC GGACGCGGCG 
    GCGGCGGCGC CGGCCGACGA GGAGGAAGAG GTGGACGAGA CAGGGATAGA 
    GCCCCGCGAC ATCGACCTCG TCATGACGCA GGCCAGCGTG TCGCGGGCCA 
    AGGCCGTCAA GGCGCTCAAG GCGCACGACG GCGACATTGT GAGCGCCATC 
    ATGGAGCTCA CGGCCTGAAG CCCCCTCCTG CTGCTGCATT GGCACCACCT 
    CTCGTCCCCC ATTTCAGTAT CGTGTTTTTT TTTATGGCGT TTCGTCGTGG 
    GTTTGCATAA GATGCCCTGT TTGTTCAGCT GCTGGACTTT GCATCAAACT 
    TTTCATAGCA TGTTCCCATA TTAGTGTCAT CTTAAATGGA GTTTTCAGAC 
    TTGTTTGAAC GGCAACACCA ATAGAGTTCG ATACTTTGAG TCAATTAAGA 
    GGAG

    Gene models with high sequence identity

    1. AT3G12390.1 [+] show detail - Nascent polypeptide-associated complex (NAC), alpha subunit family protein
      E-value: 5e-41; Score: 165.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Nascent polypeptide-associated complex, alpha subunit 1.9e-75
    ProfileScan Nascent polypeptide-associated complex NAC 17.745
    HMMPfam Nascent polypeptide-associated complex NAC 9.3e-23

    See the detailed result >

    AT3G12390.1

    Model type
    Protein coding
    Short Description
    Nascent polypeptide-associated complex (NAC), alpha subunit family protein
    Computational Description
    Nascent polypeptide-associated complex (NAC), alpha subunit family protein; INVOLVED IN: response to salt stress; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: nascent polypeptide-associated complex subunit alpha-like protein 3 (TAIR:AT5G13850.1); Has 5275 Blast hits to 2514 proteins in 367 species: Archae - 69; Bacteria - 684; Metazoa - 1880; Fungi - 785; Plants - 552; Viruses - 60; Other Eukaryotes - 1245 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR