K16545

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16545

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16545

Determination of introduced cDNA(s)

  • J033000L02 - Rice Full-length cDNAs - Original: J033000L02

    full reading [+] show sequence

    Nucleotide sequence: J033000L02 - full reading 
    GAGCGGCGGC TCTCTTGGCG TGCTCCTGCT CAGCTGAGCT CGGGTGAGCT 
    CTTTCTACCT CCAAGATTTC CTCCTCCTAC CTCCACTCCA CTCGCCTCAC 
    CTCAGCTCAC CTCAGCGTCG TCTTCTTCCT TCCGCAACCT CGCAGGTTGA 
    ACCGGAGAGC GGGAGGAGCG AGTGAGTGGT GGTGGAGGCC ATGGCGGAGG 
    ATGAGGCGGC CAGCGCCAAG AAGCTCTTCT CCGCCTCCGA TGTCGTAGGG 
    CACGCGTCCA GGAAGGATTG CTGGGTCGTC ATCCATGGCA AGGTGTATGA 
    TGTGACCAAG TTCTTGGAAG ACCACCCTGG TGGAGAGGAT GTTCTCCTGC 
    ATGCATCTGG TCAGATGAGA TTCAGATTCC TCCATTCCTA TCAACTGTAA 
    TGATAATGTT TGATGCTAAA GCTGTGATGC TATTGAAACT ATTTACGACC 
    TTATCTGCTC ATCAATTTAA TTGTGATGAT AAATGCTCGG ATTCGTTGCT 
    GTCAGTTAAT TTTCTTCATT TTTGGTGGTC AGTTCAAGCC TGCAGTAGTA 
    GAATTAGATT GGTTCATGTT GTTTAGTTAA GAGAAACCAA TTGTATCATG 
    CTGCTCTGAT CTGAATAGAT GGTTGTGTTC AACACCTAGT CAACTGCCAT 
    TAGCAATTTA TCATAAATCA GCCCGTACGG TATTTGCTTT TGTAATGCAG 
    CCAGTGGGCA TCGATGCTGA TTCATGATTT GTACCACCAG CTTCTGTTAA 
    CCTTGTATTG TGCCACGTGG AAGCCTCATA ACCATAGGCA TATTCAACTC 
    CTGTTGTTCT AATTGTCTAA GAGAATTAAC AAAATTAAAA TCATGATAGA 
    GCCGCTTGTT GCTTAATTCT TGCAAATATC TTGCCTTCTA AGTCATGGAA 
    TAACATGCAT TTTACATCAT GAAAATTCTC AGTTATTCAT TACCAAACCA 
    ATATAATGAT GGCTTGCTAC TGTTTTCTTG GGAGACAAAA CAATGCCAGG 
    GCAATTTTAG TTTCAATATT TCTAAATACC GTACGGTCTG ATTAATTTAT 
    GATAAATATG TTGTCCCAGC AGAGACCAAT GCATAGAAGT TAATGCTTTT 
    TTTACTTTTC GGATGTTGCT TTCCTCTGGA CTAAATTTCT GAGCCTCACT 
    AATCACACTA AATTTGCTAT TGCAAATGTT CCCCTTGTAT TGTACTGATT 
    CCATTGTACT TGTTCCGTTT AATTGCACAT GCTATGTTGA TATATTACTT 
    TAACTAGATG ACAAAAATAA AATGTTAACA TATGGTGCGG TTCTGAAAGA 
    AAGACATTTG GAATAGATGC AAGGTTTATT GACAAGTTTC TATTTTCTGT 
    TGCCTCTGTA TTTAATCAAT TCTTGAAGCC TCTGGGGATG CCACGGAGGC 
    ATTTGAAGAT GTGGGGCACA GCACATCAGC CATCAGCATG ATGAACAACT 
    ACTTGATTGG AAGCATCAAG GACTATGTGC CTCCTAGTGC ATCAGAGGCT 
    ACAACCATTG GCGGCAATGA TGTGCCGCCA AACTTCAGAA GGATGCCACA 
    GAAGAAAGGA CCTCCTGCTC CCAACACCTT TCTGGACTTC CTGCTCCCTC 
    TGTTTGTGCT CGGCCTTGCC TTTGCCGCTT GGTACTACCT GACCTTCATT 
    GCCAAGGCCT AGTAAATTTG GTGAAGGTTT GAAGTATTGA ACATTTTACT 
    ATGCCACGTC TGCTTCAGCG ACACATGGAG ATATATTCTG GTCAGTTCTA 
    AGTTTTATTA TGAGGTTTCT GGCTGTGAAT TAGAAATGTC ATCGTATTAT 
    TATTTGTTAC CAAATTGTTG GCTTTGCTTC GAAGTTGGTA CCACTCTTAC 
    ATGTAAATGG CGATGGCTGC ATCAGTAAAA TGTATGGATG GGGCATTTTC 
    CCTTTCGCC

    Gene models with high sequence identity

    1. AT5G48810.1 [+] show detail - cytochrome B5 isoform D
      E-value: 5e-13; Score: 73.60

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cytochrome b5 9.5e-18
    ProfileScan Cytochrome b5 18.794
    HMMPanther CYTOCHROME B5 2.6e-18
    HMMPanther CYTOCHROME B5 2.1e-11
    Gene3D Cytochrome b5 2.9e-16
    FPrintScan Cytochrome b5 5.3e-06
    FPrintScan Cytochrome b5 5.3e-06
    superfamily Cytochrome b5 1.5e-19
    PatternScan Cytochrome b5, heme-binding site 0

    See the detailed result >

    AT5G48810.1

    Model type
    Protein coding
    Short Description
    cytochrome B5 isoform D
    Curator Summary
    Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation.
    Computational Description
    cytochrome B5 isoform D (CB5-D); FUNCTIONS IN: heme binding; INVOLVED IN: defense response to bacterium; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform B (TAIR:AT2G32720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR