K16545

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16545

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16545

Determination of introduced cDNA(s)

  • J033000L02 - Rice Full-length cDNAs - Original: J033000L02

    full reading [+] show sequence

    Nucleotide sequence: J033000L02 - full reading
    GAGCGGCGGC TCTCTTGGCG TGCTCCTGCT CAGCTGAGCT CGGGTGAGCT 
    CTTTCTACCT CCAAGATTTC CTCCTCCTAC CTCCACTCCA CTCGCCTCAC
    CTCAGCTCAC CTCAGCGTCG TCTTCTTCCT TCCGCAACCT CGCAGGTTGA
    ACCGGAGAGC GGGAGGAGCG AGTGAGTGGT GGTGGAGGCC ATGGCGGAGG
    ATGAGGCGGC CAGCGCCAAG AAGCTCTTCT CCGCCTCCGA TGTCGTAGGG
    CACGCGTCCA GGAAGGATTG CTGGGTCGTC ATCCATGGCA AGGTGTATGA
    TGTGACCAAG TTCTTGGAAG ACCACCCTGG TGGAGAGGAT GTTCTCCTGC
    ATGCATCTGG TCAGATGAGA TTCAGATTCC TCCATTCCTA TCAACTGTAA
    TGATAATGTT TGATGCTAAA GCTGTGATGC TATTGAAACT ATTTACGACC
    TTATCTGCTC ATCAATTTAA TTGTGATGAT AAATGCTCGG ATTCGTTGCT
    GTCAGTTAAT TTTCTTCATT TTTGGTGGTC AGTTCAAGCC TGCAGTAGTA
    GAATTAGATT GGTTCATGTT GTTTAGTTAA GAGAAACCAA TTGTATCATG
    CTGCTCTGAT CTGAATAGAT GGTTGTGTTC AACACCTAGT CAACTGCCAT
    TAGCAATTTA TCATAAATCA GCCCGTACGG TATTTGCTTT TGTAATGCAG
    CCAGTGGGCA TCGATGCTGA TTCATGATTT GTACCACCAG CTTCTGTTAA
    CCTTGTATTG TGCCACGTGG AAGCCTCATA ACCATAGGCA TATTCAACTC
    CTGTTGTTCT AATTGTCTAA GAGAATTAAC AAAATTAAAA TCATGATAGA
    GCCGCTTGTT GCTTAATTCT TGCAAATATC TTGCCTTCTA AGTCATGGAA
    TAACATGCAT TTTACATCAT GAAAATTCTC AGTTATTCAT TACCAAACCA
    ATATAATGAT GGCTTGCTAC TGTTTTCTTG GGAGACAAAA CAATGCCAGG
    GCAATTTTAG TTTCAATATT TCTAAATACC GTACGGTCTG ATTAATTTAT
    GATAAATATG TTGTCCCAGC AGAGACCAAT GCATAGAAGT TAATGCTTTT
    TTTACTTTTC GGATGTTGCT TTCCTCTGGA CTAAATTTCT GAGCCTCACT
    AATCACACTA AATTTGCTAT TGCAAATGTT CCCCTTGTAT TGTACTGATT
    CCATTGTACT TGTTCCGTTT AATTGCACAT GCTATGTTGA TATATTACTT
    TAACTAGATG ACAAAAATAA AATGTTAACA TATGGTGCGG TTCTGAAAGA
    AAGACATTTG GAATAGATGC AAGGTTTATT GACAAGTTTC TATTTTCTGT
    TGCCTCTGTA TTTAATCAAT TCTTGAAGCC TCTGGGGATG CCACGGAGGC
    ATTTGAAGAT GTGGGGCACA GCACATCAGC CATCAGCATG ATGAACAACT
    ACTTGATTGG AAGCATCAAG GACTATGTGC CTCCTAGTGC ATCAGAGGCT
    ACAACCATTG GCGGCAATGA TGTGCCGCCA AACTTCAGAA GGATGCCACA
    GAAGAAAGGA CCTCCTGCTC CCAACACCTT TCTGGACTTC CTGCTCCCTC
    TGTTTGTGCT CGGCCTTGCC TTTGCCGCTT GGTACTACCT GACCTTCATT
    GCCAAGGCCT AGTAAATTTG GTGAAGGTTT GAAGTATTGA ACATTTTACT
    ATGCCACGTC TGCTTCAGCG ACACATGGAG ATATATTCTG GTCAGTTCTA
    AGTTTTATTA TGAGGTTTCT GGCTGTGAAT TAGAAATGTC ATCGTATTAT
    TATTTGTTAC CAAATTGTTG GCTTTGCTTC GAAGTTGGTA CCACTCTTAC
    ATGTAAATGG CGATGGCTGC ATCAGTAAAA TGTATGGATG GGGCATTTTC
    CCTTTCGCC

    Gene models with high sequence identity

    1. AT5G48810.1 [+] show detail - cytochrome B5 isoform D
      E-value: 0.0000000000005; Score: 73.60

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cytochrome b5 9.5e-18
    ProfileScan Cytochrome b5 18.794
    HMMPanther CYTOCHROME B5 2.6e-18
    HMMPanther CYTOCHROME B5 0.000000000021
    Gene3D Cytochrome b5 2.9e-16
    FPrintScan Cytochrome b5 0.0000053
    FPrintScan Cytochrome b5 0.0000053
    superfamily Cytochrome b5 1.5e-19
    PatternScan Cytochrome b5, heme-binding site 0

    See the detailed result >

    AT5G48810.1

    Model type
    Protein coding
    Short Description
    cytochrome B5 isoform D
    Curator Summary
    Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation.
    Computational Description
    cytochrome B5 isoform D (CB5-D); FUNCTIONS IN: heme binding; INVOLVED IN: defense response to bacterium; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform B (TAIR:AT2G32720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR