K16551

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16551

Determination of introduced cDNA(s)

J023108B15 - Rice Full-length cDNAs - Original: J023108B15

full reading [+] show sequence

GGTCTCTCTT CCCCTTCCAC GCCACCTCTC CCCTTCCCAC AGTCCCACGT 
CGTCGCCGGC GACACGCAGA CGAACGCGCC CGGCAAACCA TGGCGGCGCG 
ATCCGGACCA CCAGCCGCGG CCGTCGACCC CGAGGCCGTG CTCTCCCACA 
GCTTCCCCGA GGTCTCCTTC GCCTACGACG AGAGGGATGT GGCGCTGTAC 
GCGCTCGGAG TCGGGGCGTG CGGCGCGGAC GCCATCGACG AGAAGGAGCT 
GCACCTGGTG TACCACAGGG ACGGCCAGCC ACACATCAAG GCTCTTCCTA 
CTTTTGCTTC TTTATTTCCT TTCAAGAACA GCAATGGGCT TGGAATTGTT 
GATGTGCCTG GCCTTAACTT TGACGCAAGC CTTCTATTGC ATGGTCAACA 
TTACATAGAG ATATACAAGC CAATTCATTC GCGTGCCAAT GTTGTAAACA 
AGACCAAGAT AGCTGGCTTG CATGACAAAG GGAAAGCAAC TATTCTTGAG 
ATTGAGACTA CAACCCATGT CAAAGATTCT GGTGAAGTTT TATGTATGAA 
CAGGAGTACT ATCTACCTGC GTGGTGCTGG AGGCTTTTCT GATCCTTCAC 
GACCATACTC CTATGCTAGT TATCCCACTA ACCAGGTTTC TCGCATTTCT 
ATTCCAAATT CAGCGCCTTC TGCAGTATAT GAAGACCAGA CACAACAATC 
CCAGGCACTA TTGTACAGGT TATCTGGGGA CTATAATCCT TTGCATTCAG 
ACCCTATGGT TGCGCAGGTT GCAGGGTTCA CTCGTCCAAT ACTGCATGGT 
CTCAGTTCCC TTGGATTCGC GATCCGCGCT GTCATCAAAT CTTTCTGCAA 
TGGAGATCCA ACAGCAGTGA AAAGCATCTT TGGCCGTTTT CTTCTGCATG 
TCTATCCTGG AGAAACTTTA GTCACTGAAA TGTGGCTCCA AGGCCAGAGG 
GTGCTTTATC AAACAAAGGT CAAGGAACGC AACCGCGCCG TGCTTTCTGG 
ATATGTGTTG CTCAAACACA TCCCCTCATC ATTGTAAGTG CTGTATCATA 
TTCTTGACTG GATATTTTAT AAATTGGTGC CTGCCTGCTT GTATTAGTTT 
GGTAGTGTGT AGTGGTCAGA AAAGCTAAAG CTTTCCGGGG ACATAAAATC 
AGGTAAATGA AGAGCTTCAG CTACCGCAAG TGGTGGGTTG CCATTGTAAT 
GATAACAAGT GCTCTGCACC TATCTTCAAA TGATACATTG CCTAATTTCT 
CTTCTG

Gene models with high sequence identity

AT1G76150.1 [+] show detail - enoyl-CoA hydratase 2
E-value: 6e-109; Score: 391.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.9e-36
Gene3D	no description	6.9e-37
superfamily	Thioesterase/thiol ester dehydrase-isomerase	2.6e-33
superfamily	Thioesterase/thiol ester dehydrase-isomerase	3.7e-25
HMMPfam	MaoC-like dehydratase	1.4e-22

See the detailed result >

AT1G76150.1

Model type: Protein coding
Short Description: enoyl-CoA hydratase 2
Curator Summary: Encodes a monofunctional enoyl-CoA hydratase 2, involved in the degradation of even cis-unsaturated fatty acids, gene expression is enhanced during the first 2 days of germination, as well as in senescent leaves.
Computational Description: enoyl-CoA hydratase 2 (ECH2); FUNCTIONS IN: oxidoreductase activity, 3R-hydroxyacyl-CoA dehydratase activity; INVOLVED IN: fatty acid beta-oxidation, unsaturated, even number, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MaoC-like dehydratase (InterPro:IPR002539), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); Has 2242 Blast hits to 2242 proteins in 541 species: Archae - 23; Bacteria - 1245; Metazoa - 172; Fungi - 395; Plants - 47; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033045J24 - Rice Full-length cDNAs - Original: J033045J24

full reading [+] show sequence

GTGGAGGTAC GACCATCACC CGTCCCATCC ATCTCCTCTG CTCCAAGAAG 
CAAACACCAA GAAACAAAGA GGGAGGGAGA GAGAGAGATA GAGGGAGAGA 
GTCCTTTTCT CTCACCAGCT CTCCTTTCAA GCTCAGTACG GTGGCCGCTC 
ACCGGATCCA AGAAGAAAAC CTCTCTTCCG TTTATGATTC TTTCTCTTGA 
GTTCTTGAGG TTTTATTTGG TTTTTCTTTG AGTTTTTACT CGTTTTTCTC 
GATTTCTCGA TTTCGATGAC TCGGAACTAT ATAGGTTCTC TAATGACAAG 
TAAGAGCAAG AAATTTCTAG CACGGAGAAG CTCTCATGAG ATTGACAGAA 
GAGAGTGAGC ACACGGCGTG ATGGCCGGCA TAAAATCTAT CCCGTCCTCG 
CCGCGTGCTC ACTCCTCTTT CTGTCACCCT CTTTCTCTCA GGGCTCAACT 
CCTATCCAGA TCTATTAGCA GGCTTACAAA ATCACTAAAT TACTTTGATT 
TGGTGTTACT CAATTTGATT GTTATGATCT AGCCTTTTCC TCCAAAGAAG 
CACTAGAAAC CACCCCTTAT GCTTGGTAGA GAGAAACCTC ATGCTTGGTA 
CAGAGAAATT CAGCCACAAG AAGACAGAGA ACGCATGCTT GAAGTACTCT 
GTCTTTTCTC CCACACTTTA CCCTGTCACC TCCTTATCTC TTAGATGTGC 
GTAAAATGCA TATGTTTACC CCTGTTTTTC TCAATCTTTT TCAGCCGTGC 
TGTCGCCGGA ACTACTACCG AGGAGAGTGA TACGGATGCT GGTGATAATG 
TGGTAGTACT ACTCCTTGCG TTGGGAGCTG AAGCATGGAG ATGCTGCCAG 
TACACTGGAG CACTGTGGTG ATTCATCAAC AGGATTAACC GGATCTTCTC 
TCTCTTTCTT CTTCTACCCC ATCTCTTCTC TTCACTTCTC TCTTTGCTCT 
CTTGTTTTTC AGCTAAAGCT CCTTGTGCAG GTTGTTGGCC ATGGTGGTGG 
GGTTCATCAA GTTATTGCTT GGTCAAAAAT GGAGCATGGA AGAGGCTAAC 
AGATGACCCA TATTTGGCAT GCAAGGTTGT TTCGCTATGC GTTTGCCAGA 
TCTGGCTCGC ATCTTAGATA AAGGTCATCA TTCATGTTTA ATGGCCAGCA 
AGGCAGCAAC TACACCATTA ATTTCCACAA GGGATTGGGA TGAGATATGA 
TTCAAGCTGA TGGATGCTTT ACAAAAGTCA CTTCATGTGC TTGACATGCA 
TGCGCGTGCA GTCCCATTCT GAGAGGGCCT CAATCTTGGC GCGGCTGGAG 
ACGGACACTG TTGAATAAAT TGGAACTGAT CGAAGGCTCG AAGCACAGAT 
TATACTAGTA TACACGAGTT CTAGATGGAT GCATGTTGTT AGCCTCCAGA 
TATCGTGTTT ATGTTCTTCC TGTCTCTACA AAATCTTTTC TCTGTATCCT 
CCAATGTACA GTTATGCTTT TTTATTTAAT TTGTTTTGAT TTCTGTATGT 
ATAAGGATTG CCTCATGATC ACAATAGTGT ATATGTTGTA TATATCTATC 
AACAATGTAT ACCAAGTTTT TCCACATAAC CTTATCTGAA GCATCCTTTA 
ATAATTC

Gene models with high sequence identity

Not founds.

InterPro Scan Digest

See the detailed result >