K16551

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16551

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16551

Determination of introduced cDNA(s)

  • J023108B15 - Rice Full-length cDNAs - Original: J023108B15

    full reading [+] show sequence

    Nucleotide sequence: J023108B15 - full reading
    GGTCTCTCTT CCCCTTCCAC GCCACCTCTC CCCTTCCCAC AGTCCCACGT 
    CGTCGCCGGC GACACGCAGA CGAACGCGCC CGGCAAACCA TGGCGGCGCG
    ATCCGGACCA CCAGCCGCGG CCGTCGACCC CGAGGCCGTG CTCTCCCACA
    GCTTCCCCGA GGTCTCCTTC GCCTACGACG AGAGGGATGT GGCGCTGTAC
    GCGCTCGGAG TCGGGGCGTG CGGCGCGGAC GCCATCGACG AGAAGGAGCT
    GCACCTGGTG TACCACAGGG ACGGCCAGCC ACACATCAAG GCTCTTCCTA
    CTTTTGCTTC TTTATTTCCT TTCAAGAACA GCAATGGGCT TGGAATTGTT
    GATGTGCCTG GCCTTAACTT TGACGCAAGC CTTCTATTGC ATGGTCAACA
    TTACATAGAG ATATACAAGC CAATTCATTC GCGTGCCAAT GTTGTAAACA
    AGACCAAGAT AGCTGGCTTG CATGACAAAG GGAAAGCAAC TATTCTTGAG
    ATTGAGACTA CAACCCATGT CAAAGATTCT GGTGAAGTTT TATGTATGAA
    CAGGAGTACT ATCTACCTGC GTGGTGCTGG AGGCTTTTCT GATCCTTCAC
    GACCATACTC CTATGCTAGT TATCCCACTA ACCAGGTTTC TCGCATTTCT
    ATTCCAAATT CAGCGCCTTC TGCAGTATAT GAAGACCAGA CACAACAATC
    CCAGGCACTA TTGTACAGGT TATCTGGGGA CTATAATCCT TTGCATTCAG
    ACCCTATGGT TGCGCAGGTT GCAGGGTTCA CTCGTCCAAT ACTGCATGGT
    CTCAGTTCCC TTGGATTCGC GATCCGCGCT GTCATCAAAT CTTTCTGCAA
    TGGAGATCCA ACAGCAGTGA AAAGCATCTT TGGCCGTTTT CTTCTGCATG
    TCTATCCTGG AGAAACTTTA GTCACTGAAA TGTGGCTCCA AGGCCAGAGG
    GTGCTTTATC AAACAAAGGT CAAGGAACGC AACCGCGCCG TGCTTTCTGG
    ATATGTGTTG CTCAAACACA TCCCCTCATC ATTGTAAGTG CTGTATCATA
    TTCTTGACTG GATATTTTAT AAATTGGTGC CTGCCTGCTT GTATTAGTTT
    GGTAGTGTGT AGTGGTCAGA AAAGCTAAAG CTTTCCGGGG ACATAAAATC
    AGGTAAATGA AGAGCTTCAG CTACCGCAAG TGGTGGGTTG CCATTGTAAT
    GATAACAAGT GCTCTGCACC TATCTTCAAA TGATACATTG CCTAATTTCT
    CTTCTG

    Gene models with high sequence identity

    1. AT1G76150.1 [+] show detail - enoyl-CoA hydratase 2
      E-value: 6e-109; Score: 391.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.9e-36
    Gene3D no description 6.9e-37
    superfamily Thioesterase/thiol ester dehydrase-isomerase 2.6e-33
    superfamily Thioesterase/thiol ester dehydrase-isomerase 3.7e-25
    HMMPfam MaoC-like dehydratase 1.4e-22

    See the detailed result >

    AT1G76150.1

    Model type
    Protein coding
    Short Description
    enoyl-CoA hydratase 2
    Curator Summary
    Encodes a monofunctional enoyl-CoA hydratase 2, involved in the degradation of even cis-unsaturated fatty acids, gene expression is enhanced during the first 2 days of germination, as well as in senescent leaves.
    Computational Description
    enoyl-CoA hydratase 2 (ECH2); FUNCTIONS IN: oxidoreductase activity, 3R-hydroxyacyl-CoA dehydratase activity; INVOLVED IN: fatty acid beta-oxidation, unsaturated, even number, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MaoC-like dehydratase (InterPro:IPR002539), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); Has 2242 Blast hits to 2242 proteins in 541 species: Archae - 23; Bacteria - 1245; Metazoa - 172; Fungi - 395; Plants - 47; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J033045J24 - Rice Full-length cDNAs - Original: J033045J24

    full reading [+] show sequence

    Nucleotide sequence: J033045J24 - full reading
    GTGGAGGTAC GACCATCACC CGTCCCATCC ATCTCCTCTG CTCCAAGAAG 
    CAAACACCAA GAAACAAAGA GGGAGGGAGA GAGAGAGATA GAGGGAGAGA
    GTCCTTTTCT CTCACCAGCT CTCCTTTCAA GCTCAGTACG GTGGCCGCTC
    ACCGGATCCA AGAAGAAAAC CTCTCTTCCG TTTATGATTC TTTCTCTTGA
    GTTCTTGAGG TTTTATTTGG TTTTTCTTTG AGTTTTTACT CGTTTTTCTC
    GATTTCTCGA TTTCGATGAC TCGGAACTAT ATAGGTTCTC TAATGACAAG
    TAAGAGCAAG AAATTTCTAG CACGGAGAAG CTCTCATGAG ATTGACAGAA
    GAGAGTGAGC ACACGGCGTG ATGGCCGGCA TAAAATCTAT CCCGTCCTCG
    CCGCGTGCTC ACTCCTCTTT CTGTCACCCT CTTTCTCTCA GGGCTCAACT
    CCTATCCAGA TCTATTAGCA GGCTTACAAA ATCACTAAAT TACTTTGATT
    TGGTGTTACT CAATTTGATT GTTATGATCT AGCCTTTTCC TCCAAAGAAG
    CACTAGAAAC CACCCCTTAT GCTTGGTAGA GAGAAACCTC ATGCTTGGTA
    CAGAGAAATT CAGCCACAAG AAGACAGAGA ACGCATGCTT GAAGTACTCT
    GTCTTTTCTC CCACACTTTA CCCTGTCACC TCCTTATCTC TTAGATGTGC
    GTAAAATGCA TATGTTTACC CCTGTTTTTC TCAATCTTTT TCAGCCGTGC
    TGTCGCCGGA ACTACTACCG AGGAGAGTGA TACGGATGCT GGTGATAATG
    TGGTAGTACT ACTCCTTGCG TTGGGAGCTG AAGCATGGAG ATGCTGCCAG
    TACACTGGAG CACTGTGGTG ATTCATCAAC AGGATTAACC GGATCTTCTC
    TCTCTTTCTT CTTCTACCCC ATCTCTTCTC TTCACTTCTC TCTTTGCTCT
    CTTGTTTTTC AGCTAAAGCT CCTTGTGCAG GTTGTTGGCC ATGGTGGTGG
    GGTTCATCAA GTTATTGCTT GGTCAAAAAT GGAGCATGGA AGAGGCTAAC
    AGATGACCCA TATTTGGCAT GCAAGGTTGT TTCGCTATGC GTTTGCCAGA
    TCTGGCTCGC ATCTTAGATA AAGGTCATCA TTCATGTTTA ATGGCCAGCA
    AGGCAGCAAC TACACCATTA ATTTCCACAA GGGATTGGGA TGAGATATGA
    TTCAAGCTGA TGGATGCTTT ACAAAAGTCA CTTCATGTGC TTGACATGCA
    TGCGCGTGCA GTCCCATTCT GAGAGGGCCT CAATCTTGGC GCGGCTGGAG
    ACGGACACTG TTGAATAAAT TGGAACTGAT CGAAGGCTCG AAGCACAGAT
    TATACTAGTA TACACGAGTT CTAGATGGAT GCATGTTGTT AGCCTCCAGA
    TATCGTGTTT ATGTTCTTCC TGTCTCTACA AAATCTTTTC TCTGTATCCT
    CCAATGTACA GTTATGCTTT TTTATTTAAT TTGTTTTGAT TTCTGTATGT
    ATAAGGATTG CCTCATGATC ACAATAGTGT ATATGTTGTA TATATCTATC
    AACAATGTAT ACCAAGTTTT TCCACATAAC CTTATCTGAA GCATCCTTTA
    ATAATTC

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >