K16607

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16607

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16607

Determination of introduced cDNA(s)

  • J033102H16 - Rice Full-length cDNAs - Original: J033102H16

    full reading [+] show sequence

    Nucleotide sequence: J033102H16 - full reading
    GGGGGCGTCC AAATCCGCCG CCGAATTCCC CACCCGTCGC GTCCAAAATC 
    CAAATCCGCC GCCGCGATCG AGGCCGACGA GGAGAGGTTG AGGTTGAGGT
    GAGAGCCATG GTGAGCGCCT TCTTCCTGCT GTGCGGGTGC GTGGACCAGG
    CGAGCGTCGC GGTGGTGGAG AAGTGGGGCC GCTTCCTCCG CCTCGCCGAG
    CCGGGCCTCC ACTTCTTCAA CCCGTTCGCC GGCGAGTTCG TCGCCGGGAC
    GCTCTCCACC CGCGTCCAGT CGCTCGACGT CCGCGTCGAG ACCAAGACCA
    AGGATAATGT CTTTGTTCAG CTTATCTGCA CAATCCAATA TCGGGTTGTT
    AAGGAACATG CTGATGATGC ATTCTATGAG TTGCAGAATC CCCAACAGCA
    AATTCAGGCC TACGTCTTTG ATGTGGTCCG AGCTATAGTT CCGAGAATGA
    ATCTTGATGA TCTTTTTGAG CAAAAGAATG ATGTGGCGAA AGCTGTACTT
    CAGGAGCTAG AAAAGGTGAT GGGAGATTAT GGTTACAGCA TTGAGCACAT
    TCTCATGGTT GACATCATCC CTGATGCTGC TGTACGCAGA GCAATGAATG
    AAATAAATGC AGCACAAAGG CTTCAGCTTG CAAGTGTCTA CAAAGGAGAG
    GCGGAGAAGA TTCTTCTGGT GAAGAAAGCA GAAGCAGAGG CAGAGGCAAA
    ACACCTTTCC GGTGTCGGCA TTGCTAGACA GCGGCAGGCG ATAACTGATG
    GCCTGAGAGA GAACATCCTG AACTTCTCGC ACTCGGTTTC AGGCACCTCA
    GCAAAAGAAG TCATGGATCT CATCATGGTC ACGCAGTACT TCGACACCAT
    CAAAGAACTT GGGGATGGCT CGAAGAACAC CACGGTGTTC ATACCTCATG
    GCCCAGGCCA TGTCAGGGAT ATCAGCGAGC AAATCCGGAA TGGTATGATG
    GAAGCGTCCT GCAGCAACGT GTAAATCGGT ATCGAATGCG GAACCAAGGT
    TGGGGGTGGT TCAGATGGGA GGTCCTGTTT ATAGTGAATA GTACGAATGA
    ATGCTAGTAG CATGTGTTGT TTGCACGCGC GCCCTGGAGT TGTATGCAGT
    GGTAGATAGA GTTCGAGTTT TGGCATAATA ATATTGTCTG AATTTTATGT
    AAAAGAAAAT CACATGTCTT CCTTTTGTGA GTTAAAAGTT GCACCGATTT
    ATGCATGGC

    Gene models with high sequence identity

    1. AT5G51570.1 [+] show detail - SPFH/Band 7/PHB domain-containing membrane-associated protein family
      E-value: 4e-120; Score: 428.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Band 7 protein 1.3e-29
    HMMSmart Band 7 protein 3.6e-25
    HMMPanther STOMATIN-RELATED 1e-74

    See the detailed result >

    AT5G51570.1

    Model type
    Protein coding
    Short Description
    SPFH/Band 7/PHB domain-containing membrane-associated protein family
    Computational Description
    SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 5870 Blast hits to 5870 proteins in 1885 species: Archae - 189; Bacteria - 4209; Metazoa - 145; Fungi - 209; Plants - 268; Viruses - 20; Other Eukaryotes - 830 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR